Myroides sp. A21: MYRA21_1143
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Entry
MYRA21_1143 CDS
T03521
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
myr
Myroides sp. A21
Pathway
myr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
myr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MYRA21_1143 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myr03019
]
MYRA21_1143 (rnr)
03016 Transfer RNA biogenesis [BR:
myr03016
]
MYRA21_1143 (rnr)
Enzymes [BR:
myr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MYRA21_1143 (rnr)
Messenger RNA biogenesis [BR:
myr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MYRA21_1143 (rnr)
Transfer RNA biogenesis [BR:
myr03016
]
Prokaryotic type
tRNA degradation factors
MYRA21_1143 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
OB_RNR_1st
S1
OB_HELZ2
HTH_25
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AJA68304
LinkDB
All DBs
Position
1211994..1214171
Genome browser
AA seq
725 aa
AA seq
DB search
MAKKIKHKKSKAFDFAPKILKFLSKNTTKTYNYKQIAAQLEINDTQGRNEIIKELKHLIS
KGKIEEIETGKYKFIPKANYVEGYIDMTSRKTAYLVVEGVEDDVFIPTNNLNKALDGDFV
KAYIYNKRKGKKPEGEVVEILERHKKQFVGVIEIQKNFAFVSTADAKMYTDIFVPKEKVG
EARDGDVVVVEIEDWPEKADSPFGKVMKVLGKQGEHNTEIHAILAEYGLTAEFPKEVDEY
ANHLDTSITEEEIAKRRDMRDILTFTIDPKDAKDFDDALSFRQLENGFYEIGIHIADVSH
YVKEGTILDEEAYNRATSVYLVDRTVPMLPEVLSNFACSLRPNEDKYTFSAVFELDDKAE
IRNKWFGRTVTHSDQRMAYEEAQYIIDSKDRVIPADISLTGEDQEVSEEVADAVLKLNEL
AMIMRKNRMSDGAISFDKVEVKFNLNEAAEPVGVFFKQSKEANHLIEEFMLLANRKVSEF
IGKQKKTFVYRIHDEPDQEKLFGLQTVIARFGHNINFKSKSSISKSINKLLKDVEGKKEQ
NLVDTLAIRCMSKASYSTNNIGHYGLAFDYYSHFTSPIRRYPDVMAHRLLQHYLDHGDNV
NPELYEVKCSHCSSRENLAANAERDSIKYMQVKYMQDQQGTEFLGVISGVTEWGIYVEIV
DNKCEGMVRIREIKEDYYVFEEKQYALVGQATKKMLQLGDEVIVTVKNADLVKKQLDFNY
IKKVN
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaaaattaaacataaaaagagtaaagcatttgactttgctccaaaaatatta
aaattcttatctaagaatacgactaaaacgtataactataaacagatcgctgcccaatta
gaaataaacgatactcaaggtagaaatgagattatcaaagagcttaaacaccttatctca
aaaggaaaaatagaagagatcgaaactggtaaatacaaattcattcctaaagcaaactat
gtagaaggttatatcgatatgacttctcgtaagactgcttatctagtagtagaaggagta
gaggatgatgtgtttattccaacaaataacctaaacaaggctttagatggtgacttcgtt
aaagcatatatctacaacaaacgaaaaggtaaaaaacctgaaggagaagtagtagaaatc
ttagaaagacacaaaaaacaatttgtgggagttatcgagattcaaaaaaactttgctttc
gtatctactgcagatgctaagatgtacacagatatattcgttcctaaagaaaaagtagga
gaggcacgcgatggagatgtagtcgtagtagaaatagaagattggccagagaaagcagat
agcccattcggtaaagtgatgaaagtacttggtaaacaaggagagcacaatactgaaata
cacgctattttagctgaatatggattaacagctgaattccctaaagaagtagatgaatat
gctaatcacttagatacttctatcactgaagaggaaatagcgaagcgtagagatatgcgt
gatattcttacgttcacgattgaccctaaagatgcaaaagacttcgatgatgccttatca
ttccgtcagttagaaaatggattctacgaaataggtattcacatcgctgacgtatctcac
tatgtaaaagaaggaactatcctagatgaagaggcttataacagagctacttctgtatat
ctagtggatagaactgtacctatgctacctgaggtgttatctaactttgcttgttcgtta
agacctaatgaagataaatatactttctctgctgtatttgaattagacgataaagcagaa
atcagaaacaaatggtttggtcgtactgtaacgcattctgaccaacgtatggcttacgaa
gaagctcagtatatcattgactctaaagacagagttattcctgctgatatctcgcttaca
ggagaagatcaagaagtaagtgaagaagtagctgatgcagtattaaagctaaatgaatta
gcaatgatcatgcgtaagaaccgtatgtcagatggtgctatttcttttgataaagtagag
gttaagtttaacctaaacgaagcagctgaaccagtaggtgtgttcttcaaacaatcaaaa
gaagctaatcatttgattgaggaattcatgttattagcaaatagaaaagtatctgagttt
attggtaaacaaaagaaaacattcgtatatcgtatacacgacgagccagatcaagagaag
ttatttggtctacagactgtgattgcacgctttggacataatattaacttcaagtctaag
tctagtatctctaagtctatcaacaaacttctaaaagatgtagaaggtaaaaaagaacaa
aacttagtagatactctagcgattagatgtatgagtaaagcgagttattctacgaataat
atcgggcactatggattagcgtttgattactattctcactttacttcacctattcgtcgt
tatcctgacgtaatggctcatagattattacaacactatttagaccatggtgataatgta
aatccggagttatatgaagtaaaatgttcacactgttcttctagagagaacctagctgcc
aatgcagaaagagatagtatcaaatacatgcaagtgaaatatatgcaagatcaacaaggt
acagagttcttgggtgttatctcaggtgttactgaatggggtatctatgtagaaatagta
gataacaagtgtgaaggtatggtgcgtattagagaaataaaagaagactattacgtattc
gaagagaaacaatatgcattagtaggacaagcaacgaaaaagatgcttcagctaggtgat
gaggttatcgttactgttaagaatgcagatcttgtaaaaaaacaattagatttcaactat
attaaaaaggtaaactaa
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