Myroides sp. A21: MYRA21_1968
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Entry
MYRA21_1968 CDS
T03521
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
myr
Myroides sp. A21
Brite
KEGG Orthology (KO) [BR:
myr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
myr03016
]
MYRA21_1968
Enzymes [BR:
myr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MYRA21_1968
Transfer RNA biogenesis [BR:
myr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MYRA21_1968
Prokaryotic type
tRNA splicing ligases
MYRA21_1968
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AJA69104
LinkDB
All DBs
Position
complement(2123973..2125364)
Genome browser
AA seq
463 aa
AA seq
DB search
MGRKLSGRDFIKIGFPQNNTINIALGQVNRYKKKENKNNILEEAKLVLKNPDSYIGDGIW
GKVAESMIKQVEVKKHQLNTNRVPFSIYGEDAIDEQTKYQLFTALKLPVAVQGALMPDAH
YGYGLPIGGVLATDNAVIPYGVGVDIGCRMSMSVFNLPASFLKGKDHMLLNILSEHTKFG
MYDTHKVKADHEVFSREEFKNIPFVKGLLDKAYKQLGTSGSGNHFVEFGIVRLTETKPEW
RLEPGEYIAVLSHSGSRGLGANIAKHYTYLAAKQCPLPSNAQHLAWLDLNTHDGQEYWLA
MNLAGDYAKACHDDIHRRIAKALGKQIAFTIENHHNFAWKEVINNKELIVHRKGATPAAE
GQLGIVPGSMTTNGYIVEGLGNAESLNSASHGAGRLHSRAACKQKFTKSEIKKELSSTGV
QLIGGSVDEAPMAYKDINAVMQAQSELVKVLGSFTPKFVRMDK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaggaaactttctgggagagactttattaaaataggctttcctcaaaacaataca
ataaacatcgccttagggcaagtaaatagatataagaaaaaagagaataaaaacaacata
cttgaagaagctaagcttgtactaaagaatcctgattcttacataggagacggtatctgg
ggcaaagtagcagagagtatgataaaacaagtagaagtcaaaaagcatcaactgaatacc
aatagagtaccattctctatctatggagaagacgctatagacgaacagacgaaataccaa
ctgttcactgctttaaaattacctgtggcagtacagggggcattaatgcctgacgctcat
tacggatatggtttacctatcggaggagtgttagctactgacaatgctgttattccttat
ggagtaggtgtagatataggatgtcgtatgagtatgtcagtctttaatctacctgccagc
ttcctaaaaggaaaagaccatatgttgttaaacatattatcagaacacaccaagttcggt
atgtatgacacacataaagtcaaagctgatcatgaagtattcagtagagaagagtttaaa
aacattccttttgtaaaaggcttattagataaagcatacaaacaattaggaacatcaggt
agtggtaaccacttcgtagagtttggtatcgttcgattaacggagactaaacctgagtgg
agattagaacctggagaatatatcgcagttctttcacatagtggatcgagaggtcttgga
gctaatatcgctaagcactatacgtatttagcagctaaacaatgccctctaccaagcaat
gcacaacatttagcttggttagacctcaacacacatgatgggcaagagtattggttagcc
atgaatcttgcaggagattacgcaaaggcatgtcacgatgatatacaccgtcgcattgct
aaagcattaggtaagcagatagctttcactatcgaaaaccatcataacttcgcttggaaa
gaagtgattaataacaaagaattaattgttcaccgcaaaggagctactcctgctgcagaa
ggacaattaggaatagtcccgggatcgatgactactaatggctatatagtcgaaggtctg
ggaaatgcagagagcttaaattctgcctctcatggagcaggacgcctacactcacgcgcg
gcatgtaaacagaagtttaccaagagtgagattaagaaagagctaagctctacaggtgtt
caacttatcggaggtagcgtagatgaagccccaatggcttataaagacatcaatgcagtg
atgcaagctcaaagcgaattagtaaaagtattgggaagctttacccctaaatttgtaaga
atggataagtaa
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