KEGG   Methylosinus sp. 3S-1: Ms3S1_25210
Entry
Ms3S1_25210       CDS       T11702                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
myss  Methylosinus sp. 3S-1
Pathway
myss03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:myss00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Ms3S1_25210 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:myss03021]
    Ms3S1_25210 (rho)
   03019 Messenger RNA biogenesis [BR:myss03019]
    Ms3S1_25210 (rho)
Transcription machinery [BR:myss03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Ms3S1_25210 (rho)
Messenger RNA biogenesis [BR:myss03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Ms3S1_25210 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 S1CSD-TOTE-2 NACHT ATPase_2 AAA Fungal_virus_P2_C Spore_III_AA
Other DBs
NCBI-ProteinID: BGE86085
LinkDB
Position
complement(2664833..2666101)
AA seq 422 aa
MGEIKLQDLKSKSAAELLAFAEEHEVENASLMRRQELLFAILKQFAGREVEIVGEGVVEV
LQDGFGFLRSPDANYLAGPDDIYVSPSQIRRFGLRTGDTVEGMIRSPKEGERYFALLKVN
SINFEDPEKIRHKVPFDNLTPLYPDERLKLEIEDPTRRDLSARVIDLVAPIGKGQRALVV
APPRTGKTVLLQNIAQSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHRRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRKVSDKRVFPA
IDITRSGTRKEELLVPPDILKKMYVLRRILNPMGTVDAIEFLLGKLRETPKGNAAFFDSM
NT
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgggggaaatcaagcttcaagacctgaagtcaaaatccgctgccgagctgctcgctttc
gccgaggagcatgaagtcgaaaatgcttcgctcatgcgtcggcaagagctgctgttcgcg
attctgaaacaattcgccggtcgcgaggtcgagatcgtcggcgagggcgtcgtcgaggtg
ctgcaggacggcttcggcttcctgcgctcgccggacgccaattatcttgccgggccggac
gacatctatgtctcgccctcgcagattcgtcgcttcggcctgcgcaccggcgacaccgtc
gaaggcatgattcgcagccccaaggagggcgagcgctatttcgctctgctgaaggtcaac
tcgatcaatttcgaggacccggagaagatccggcacaaggtccccttcgacaatctgacg
ccgctctatccggacgagcgcctaaagctcgagatcgaggatccgacccgcagggatctc
tccgcccgcgtcatcgatctcgtggcgccgatcggcaagggccagcgcgcgctggtcgtc
gcgccgccgcgcaccggcaagaccgtgctgctgcagaatatcgcgcagtcgatcaccacc
aatcatccggaatgttatctgatcgttctgctcatcgacgagcgtccggaggaagtgacc
gacatgcagcgttcggtgaagggcgaggtcgtctcctcgaccttcgacgagccggccgtg
cgccatgtgcaggttgcggaaatggtgatcgagaaggccaagcgcctcgtcgagcatcgt
cgcgacgtggtgatccttctcgactccatcacccgtctcggccgcgcctacaacaccgtg
gttccctcctccggcaaggtgctgaccggcggcgtcgacgccaatgcgttgcagcggccg
aagcgcttcttcggcgccgcgcgcaatatcgaggagggcggctcgctgaccatcatcgcc
acggcgctgatcgacaccggctcgcgcatggatgaggtgatcttcgaggagttcaagggc
acgggcaattcggagattattctcgaccgcaaagtgtccgacaagcgcgtgttcccggcg
atcgacatcacccgctccggcacgcgcaaggaagaactgctggtgccgccggacatcctc
aagaagatgtatgtgctgcgccgcatcctcaatccgatgggcacggtcgatgcgatcgag
ttcctgctcggcaagctgcgcgagacgccgaagggcaacgccgctttcttcgattcgatg
aacacctga

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