Micrococcus yunnanensis: M8233_02660
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Entry
M8233_02660 CDS
T08329
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
myu
Micrococcus yunnanensis
Pathway
myu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
myu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M8233_02660 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
myu03400
]
M8233_02660 (mfd)
Enzymes [BR:
myu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M8233_02660 (mfd)
DNA repair and recombination proteins [BR:
myu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M8233_02660 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
AroM
Motif
Other DBs
NCBI-ProteinID:
URI28730
LinkDB
All DBs
Position
588841..592485
Genome browser
AA seq
1214 aa
AA seq
DB search
MSAPVLAPLLPRLRAERAIEAAAASASRPLEARGVELEIGLPDGARAPLLTVLAEALAEG
HGERAAVLVVTATTREAEDLVTDLAAWAPAGAAALFPSWETLPHERLSPRSDTVGARLAV
LRRLAHPEEHAEGPLRIVVAPVRAVLQPLVAGLGELSPVTLRTGEERDFDGVVAALADAA
YSRVDMVSRRGEFAVRGGLIDVFPPTEDYPVRIEFFGDEVEQMRWFSVADQRSLEDTTED
GSGHPSELYAPPCRELLITDHVRRRAKELIPAMPAAADMLDRIAEGVAVEGMESLSPLLA
EAMTSLPRMLPTGSLTVLVEPERLRGRADDLLATNEEFLQAAWAGAAQGAVAPVDVAGAD
QSAAGGFLTVAELRAAALEQDQGFWSVTALVSDAELLPDAATLRATLGVAQTFSGDIEAM
VAHTRVRLAEGWHAVVLTDGPGSARRLAELNAEAGLTASVVDGPLPADLAPGRVSIATAP
VGSGFTIPDAQIALITEHDLFGRHRTAGTRAPGARLARKRRNAVDPLTLQPGDHVVHSQH
GIARFVELQRRKVTGGPRTAPGAEESYREYLVLEYAPSKRGAPGDRLFVPTDQLDLISTY
VGGETPSLSKMGGSDWAQTKSKAKRATREIAGELIRLYSARMASRGHAFAPDTPWQGELE
EAFPFIETPDQLTTIEDVKKDMEAAVPMDRLVSGDVGFGKTEVAVRAAFKAVQDGKQVAV
LVPTTLLARQHHQTFSDRFAGFPVKVAALSRFQTAKESKEVVEGLAHGEVDVVIGTHRLL
SDQVQFKDLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETS
TLATAPEERHPVLTSVGPYSDQQVIAAIRRELMREGQVFYVHNRVTTIDKVAKRIAELVP
EARIAVAHGKMSEARLEQIMVDFWERKFDVLVSTTIIETGLDIANANTLIVEDAHRYGLS
QLHQLRGRVGRGRERAYAYFLYDPQKPLGEVALERLKAVATHNELGAGMQLAMKDLEIRG
AGNLLGGEQSGHIAGVGFDLYLRMVGEAVADFKGEEDTAPAEVKVELPVNAHLPHDYVPG
ERLRLEMYRNLAQAADDAAVDAVVEELKDRYGPLPEPVEALVAVARFRNRARAAGVTEVM
LLGQNVKFGPAADLPESRQMRLTRMYKGAQVKPALNGVLIPRPKTKPVMGQDLVDVPLLE
WAQQVVDAIFAPEG
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcccccgtcctggccccgctgctgccgcgcctgcgcgccgaacgcgccatcgag
gcggccgccgcctccgcctcccgaccgctcgaggcccggggcgtcgagctggagatcggc
ctgcccgacggcgcccgcgcacccctgctgaccgtcctcgccgaggcgctggccgagggc
cacggcgagcgcgccgccgtcctcgtggtcaccgccaccacccgcgaggccgaggacctc
gtgaccgacctggccgcctgggcccccgccggtgccgccgcgctgttcccgtcctgggag
acgctgccccacgagcgcctgtccccgcgctcggacaccgtgggcgcgcgcctggccgtg
ctgcgccgcctcgcccaccccgaggagcacgcggagggcccgctgcgcatcgtcgtcgcc
ccggtgcgcgccgtgctgcagcccctcgtggccgggctcggcgagctgagccccgtgacc
ctgcggacgggggaggaacgggacttcgacggcgtggtggccgcgctcgcggacgccgcc
tactcgcgcgtggacatggtcagccgtcgcggcgagttcgccgtgcgcggcgggctgatc
gacgtgttcccgcccaccgaggactaccccgtgcgcatcgagttcttcggcgacgaggtg
gagcagatgcgctggttctccgtggcggaccagcgctccctcgaggacaccacggaggac
ggctcgggccacccctccgagctgtacgcgcccccgtgccgcgagctgctgatcacggac
cacgtgcgccggcgcgcgaaggagctgatcccggccatgcccgccgccgcggacatgctg
gaccgcatcgccgagggcgtggccgtggagggcatggagtccctctccccgctgctggcc
gaggccatgacgtcgctgccccgcatgctgcccaccgggtcgctgaccgtcctcgtggag
cccgagcgcctgcgcggccgcgccgacgacctgctggccaccaacgaggagttcctccag
gccgcgtgggccggcgccgcgcagggcgcggtcgccccggtggacgtggccggggcggac
cagtccgccgcgggcggcttcctcacggtggccgaactccgcgcggccgcgctcgagcag
gaccaggggttctggtccgtcaccgcgctggtctcggacgctgagctgctgcccgacgcc
gccaccctgcgcgccaccctcggcgtcgcgcagaccttctcgggcgacatcgaggccatg
gtcgcgcacacccgtgtccggctcgcggaggggtggcatgccgtggtcctcaccgacggc
cccggctccgcccgccgtctcgccgagctcaacgcggaggccggcctcacggcctccgtg
gtggacgggcccctgcccgcggacctcgccccggggcgggtctccatcgcgacggcgccc
gtcggctccggcttcacgatcccggacgcgcagatcgcgctgatcacggagcacgacctc
ttcggccggcaccgcaccgcgggcacgcgcgcccccggggcgcggctggcccggaagcgg
cgcaacgccgtcgacccgctgaccctgcagcccggcgaccacgtggtgcactcccagcac
ggcatcgcccgcttcgtggagctgcagcgccgcaaggtcaccggcggcccgcgcaccgcc
cccggcgccgaggagtcctaccgcgagtacctcgtgctcgagtacgcgccctcgaagcgc
ggcgctcccggcgaccggctgttcgtgcccaccgaccagctcgacctgatctccacctac
gtgggcggggagacgccgtcgctgtccaagatgggcggctcggactgggcgcagaccaag
tccaaggccaagcgcgccacccgtgagatcgccggcgagctcatccgcctgtactcggcc
cgcatggcctcgcgcggccacgcgttcgccccggacaccccgtggcagggcgagctggag
gaggcgttcccgttcatcgagacgccggaccagctgaccaccatcgaggacgtcaagaag
gacatggaggcggccgtccccatggaccggctcgtctccggcgacgtcggcttcggcaag
accgaggtggccgtgcgcgccgcgttcaaggcggtgcaggacggcaagcaggtggccgtg
ctcgtcccgacgacgctgctcgcccgccagcaccaccagacgttctccgaccggttcgcc
ggcttccccgtcaaggtggccgcgctctcccggttccagaccgccaaggagtccaaggag
gtcgtcgaggggctcgcgcacggcgaggtggacgtggtgatcggcacccaccggctgctc
tccgaccaggtgcagttcaaggacctgggcctggtgatcgtggacgaggagcagcgcttc
ggcgtcgagcacaaggaggcgctgaagaagatgcgcaccaacgtggacgtgctcgccatg
tccgccacgcccatcccgcgcaccctcgagatgtccctcaccggcatccgtgagacctcc
acgctggccaccgccccggaggagcgccaccccgtgctcacctcggtgggcccgtactcg
gaccagcaggtcatcgcggccatccgccgcgagctgatgcgcgagggccaggtgttctac
gtgcacaaccgcgtcaccaccatcgacaaggtggccaagcgcatcgccgagctggtgccg
gaggcgcggatcgccgtcgcccacggcaagatgagcgaggcccggctcgagcagatcatg
gtggacttctgggagcggaagttcgacgtgctcgtctccaccacgatcatcgagaccggc
ctggacatcgccaacgccaacaccctgatcgtggaggacgcccaccgctacggcctctcg
cagctgcaccagctgcgcggccgcgtgggccgtggccgcgagcgggcgtacgcgtacttc
ctgtacgacccgcagaagcccctcggcgaggtggccctcgaacgcctcaaggccgtggcc
acccacaacgagctcggcgcgggcatgcagctggccatgaaggacctcgagatccgcggc
gccggcaacctgctgggcggggagcagtccggccacatcgccggcgtgggcttcgacctc
tacctgcggatggtgggcgaggccgtggccgacttcaagggcgaggaggacaccgcgccc
gccgaggtgaaggtggagctgccggtcaacgcccacctgccgcacgactacgtgccgggg
gagcggctgcgcctcgagatgtaccgcaacctcgcccaggccgcggacgacgccgccgtg
gacgccgtggtggaggagctcaaggaccggtacggcccgctgccggagccggtggaggcg
ctcgtcgccgtcgcccggttccgcaaccgggcgcgagccgcgggcgtcaccgaggtcatg
ctgctggggcagaacgtgaagttcggccccgccgcggacctgccggagtcccgtcagatg
cgcctgacccgcatgtacaagggcgcccaggtcaagccggccctgaacggcgtcctcatc
ccgcgtcccaagaccaagccggtcatgggtcaggacctcgtggacgtcccgctgctcgag
tgggcgcagcaggtggtcgacgcgatcttcgcgccggagggctga
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