Micrococcus yunnanensis: M8233_03645
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Entry
M8233_03645 CDS
T08329
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
myu
Micrococcus yunnanensis
Brite
KEGG Orthology (KO) [BR:
myu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myu03019
]
M8233_03645 (hrpA)
Enzymes [BR:
myu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
M8233_03645 (hrpA)
Messenger RNA biogenesis [BR:
myu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
M8233_03645 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
AAA_30
HA2_N
SLFN-g3_helicase
nSTAND3
T2SSE
AAA_23
PhoH
ResIII
NACHT
FtsK_SpoIIIE
TsaE
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
URI28906
LinkDB
All DBs
Position
complement(801572..805675)
Genome browser
AA seq
1367 aa
AA seq
DB search
MTQTPPPSTPAAQPSATPHDAVAITFPEHLPVAERREEIMAAIRDHQVVIVAGETGSGKT
TQLPKMCLALGLGEAGSIGHTQPRRIAARSVAERIAQELGEEIGQTVGYQVRFTTQTSKA
TRVKVMTDGILLAEIPHDPQLRRYSVIIVDEAHERSLNIDFLLGYLRNLLPQRPDLKVII
TSATIDPERFARHFGRPLAAGEDHADAVEADDGGRVVPAPIIEVSGRTYPVEIRYRPLTD
EPSPDDPEDDADDAAETRDPLDAIGDAVLELAAEPPGDILVFLPGEREIREAADHLTGVV
AGTTRLAGTEILPLFGRLSMAEQHRVFGRAGAGVRRRIVLATNVAETSLTVPGIKYVIDT
GTARISRYSHRTKVQRLPIERVSQASANQRAGRSGRTSDGIAIRLYSEEDYLSRPEFTDP
EILRTSLASVILQMLSLGVARTPGDVKEFPFVQPPDGRQVTDGATTLTELGALEAGGARA
GTITRVGRRLARLPVDPRLGRMILEAGERGCVREVMVIAAALTIQDPRERPTEQREAADE
LHRRFADENSDFSAILNLWAYLHERQKELSGSQFRKLCRREHINWLRVQEWQDLVRQLRQ
LAKDVGLTVEAGPVDPVGRHEAVHKSLLTGLLSQIGAYDERRREYVGARGTRFAVFPGSA
LFKKRHPFVMAAELVETSRLWARTVARIEPEWAEEVAGHLVKRTYNEPHWSRRAGSVVAR
EKVTLFGVTLIPDRSVRYGRIDPELSRELFIRHALVEGDWRTRHRFFARNRAALEEVDAL
ETRLRRRDLRIGDEDLFAFYDARIPGNVVSERHFDAWWKKARQDQPDLLDLDVAALLTAD
AEDLDTDAFPTTFTYPMPGGDVELDLEYTFDPTGAAGTDGVTVAVPILLLNQVSPGPFAW
LVPGLRVELVTALIKALPKAVRKNLVPAPDVAQQLVADLEAHADPLRDELPDALSAAVRR
VRGVVVEPGLWAPDAVPLHLRMDYRVVDARGAVMGAGQDLPALQARLAQANRSAIAARLA
GTDDPASARPGPRRTGRGGRAQADGRAGAEGRRRPEGPGRSGATPAFEERHGLTSWSIGT
VPRTVSTAAGARGPAITGYPSLVPETTPDGGPAAGLTVARSADDQAAWHRAGVIRLLLAT
LPSPQRYVLDHLDNREKLTFTQNPHGSVDSLVADCTQAAVDRLVGDELPFDEAAFRALFD
RVRADLIDTVFAVTSLVEQVLSRAAQVRRRLKGSVSLALAPALSDVKAHLEQLVFPGFVA
ATGWERLQHLPRYLQGILTRLDRLDAGGHLQRDGQHMAVVQGLEDEFDAAVAAHRARFAG
TPVPAELERVRWLIEELRVSFFAQELGTAVSVSEKRVRQALARATRA
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgacgcagactcccccgccctccacgcccgccgcgcagccgtcggcgacgccccacgac
gccgtcgcgatcacgttccccgaacacctgccggtggcggagcgccgtgaggagatcatg
gccgcgatccgcgaccaccaggtggtgatcgtcgcgggcgagaccggctcgggcaagacc
acgcagctgccgaagatgtgcctggccctcgggctcggggaggccggctcgatcggccac
acccagccccggcgcatcgccgcccgctccgtggccgaacgcatcgcgcaggagctgggc
gaggagatcgggcagacggtcggctaccaggtccgcttcacgacgcagacctcgaaggcc
acccgggtcaaggtcatgacggacggcatcctgctggccgagatcccccacgacccgcag
ctgcgccgctactccgtgatcatcgtggacgaggcccacgagcgcagcctcaacatcgac
ttcctcctgggctacctgcgcaacctgctgccccagcgcccggacctgaaggtgatcatc
acctcggccaccatcgacccggagcgcttcgcccggcacttcggccggccgctggccgcg
ggcgaggaccatgcggacgcggtggaggccgacgacggcggccgcgtggtcccggcgccg
atcatcgaggtctcggggcgcacctaccccgtcgagatccgctaccggccgctgaccgac
gagccctcccccgacgaccccgaggacgatgcggacgacgccgccgagacccgcgacccc
ctcgacgcgatcggcgacgccgtcctcgagctggccgccgagccgccgggtgacatcctc
gtgttcctgccgggcgagcgggagatccgcgaggccgcggaccacctgaccggcgtcgtc
gccggcaccacgcgcctggccggcacggagatcctgccgctgttcggccgcctgtccatg
gcggagcagcaccgcgtgttcggccgcgccggggccggggtgcgccggcggatcgtgctg
gccacgaacgtcgccgagacctccctgaccgtgccgggcatcaagtacgtgatcgacacg
ggcaccgcgcgcatctcgcggtactcgcaccgcaccaaggtgcagcgcctgccgatcgag
cgtgtctcccaggccagcgcgaaccagcgcgcgggccggtccggccgcacctcggacggc
atcgcgatccgcctgtactcggaggaggactacctctcccgccccgagttcacggacccg
gagatcctgcgcacctccctggcctcggtgatcctgcagatgctgtccctcggtgtggcc
cgcaccccgggcgacgtcaaggagttccccttcgtccagcccccggacggccgacaggtc
accgatggcgccaccacgctcaccgagctcggcgcgctcgaggccggcggcgcccgcgcc
ggcaccatcacccgggtcggacgccgcctggcccgtctgcccgttgacccgcggctgggc
cgcatgatcctcgaggccggtgaacgcggctgcgtccgggaggtcatggtgatcgccgcg
gccctgaccatccaggacccccgcgagcgccccacggagcagcgcgaggccgcggacgag
ctgcaccgccggttcgcggacgagaactcggacttctccgcgatcctgaacctctgggcc
tacctgcacgagcggcagaaggagctctccggctcccagttccgcaagctgtgccgccgt
gagcacatcaactggctgcgcgtgcaggagtggcaggacctggtgcgccagctacgccag
ctcgccaaggacgtgggcctcaccgtcgaggccggacccgtggacccggtcggccggcac
gaggccgtgcacaagtccctgctcaccggcctgctctcgcagatcggcgcctacgacgag
cgccgtcgcgagtacgtgggcgcccgcggcacccgcttcgccgtgttccccggctccgcc
ctgttcaagaagcgccacccgttcgtcatggccgccgagctcgtggagacctcccggctg
tgggcgcgcacggtggcccggatcgagccggagtgggccgaggaggtcgccggccacctc
gtcaagcggacctacaacgagccgcactggtcgcggcgggcgggttccgtcgtcgcgcgc
gagaaggtgacgctgttcggcgtcaccctgatcccggaccgctcggtccggtacggccgg
atcgacccggagctctcccgcgagctgttcatccggcacgccctcgtggagggcgactgg
cgcacgcgccaccggttcttcgcccgcaaccgggccgcgctcgaggaggtcgacgccctc
gagacgcgcctgcgccgccgcgacctgcgaatcggggacgaggacctgttcgccttctac
gacgcgcggatcccgggaaacgtcgtctccgagcggcacttcgacgcgtggtggaagaag
gcgcgccaggatcagccggacctgctggacctcgacgtcgccgccctgctcaccgccgac
gccgaggacctggacaccgacgcgttccccaccacgttcacgtatccgatgcccggcggc
gacgtggagctcgacctcgagtacacgttcgacccgaccggcgcggccggcaccgacggc
gtgaccgtggccgtgccgatcctgctgctcaaccaggtctcccccggccccttcgcgtgg
ctggtccccggcctgcgggtcgagctcgtcaccgccctcatcaaggcgttgcccaaggcc
gtgcgcaagaacctcgtgcccgccccggacgtggcccagcagctcgtcgcggacctcgag
gcccacgccgacccgctgcgggacgagctgccggacgcgctgtccgcggccgtgcgccgg
gtgcgcggcgtggtggtggagcccggactgtgggccccggacgcggtgcccctgcacctg
cggatggactaccgcgtcgtggacgcccgcggcgccgtgatgggcgccggccaggacctg
cccgcgctgcaggcccggctcgcgcaggccaaccgctccgcgatcgccgcccggctcgcc
ggcaccgacgaccccgcctcggcccggccggggccgcgccgcacgggccgcggcggccgg
gcccaggccgacgggcgggccggggccgagggacgccgtcgcccggagggccccgggcgg
tccggcgcgacgccggccttcgaggagcggcacgggctgacctcatggagcatcggcacg
gtgccgcggaccgtctccaccgcggccggggcgcgtggccccgccatcacgggctacccg
agcctggtgccggagaccacgcccgacggcggccccgcggccggcctgaccgtggcccgg
tccgcggatgaccaggcggcctggcaccgggccggggtgatccggctgctgctggccacc
ctgcccagcccccagcgctacgtgctggaccacctggacaaccgggagaagctcaccttc
acccagaacccgcacggctcggtggactccctcgtcgcggactgcacgcaggccgccgtc
gaccgtctcgtcggggacgagctgccgttcgacgaggccgcgttccgtgccctgttcgac
cgggtgcgggccgacctgatcgacacggtcttcgccgtcacgtccctggtggagcaggtg
ctctcccgggccgcgcaggtgcgccgccggctcaagggctcggtctcgctcgccctcgcg
ccggcgctgtcggacgtgaaggcgcacctcgagcagctcgtgttccccggcttcgtggcc
gccacgggatgggagcggctgcagcacctgccgcgctacctgcagggcatcctgacgcgc
ctggaccggttggacgccggcggccacctgcagcgcgacgggcagcacatggcggtggtg
caggggctcgaggacgagttcgacgccgccgtcgcggcccaccgcgcccggttcgcgggc
acgcccgtgcccgcggagctggagcgggtgcgctggctcatcgaggagctgcgcgtctcg
ttcttcgcccaggagctgggcacggccgtctcggtctccgagaagcgggtgcgtcaggcg
ctcgcccgggccacgcgcgcctga
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