Micrococcus yunnanensis: M8233_08400
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Entry
M8233_08400 CDS
T08329
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
myu
Micrococcus yunnanensis
Pathway
myu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
myu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M8233_08400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myu03019
]
M8233_08400
03009 Ribosome biogenesis [BR:
myu03009
]
M8233_08400
Enzymes [BR:
myu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M8233_08400
Messenger RNA biogenesis [BR:
myu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M8233_08400
Ribosome biogenesis [BR:
myu03009
]
Prokaryotic type
rRNA helicases
M8233_08400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
CMS1
adh_short
ResIII
HEM4
Motif
Other DBs
NCBI-ProteinID:
URI27728
LinkDB
All DBs
Position
complement(1851108..1853225)
Genome browser
AA seq
705 aa
AA seq
DB search
MSDILDPQTTAEAAPELAEAEQEATGTVPQVDAAEPAAPEAPAGPAGPTFLDLGLDARVL
AAVEDLGYTRPSPIQEATIPLLLDGRDVVGLAQTGTGKTGAFALPALSRLAETTDVTGRA
DTPQVLALAPTRELALQVADAFDSYAKHLDDVSVLAVYGGSPYGPQLAGLRRGAQVVVGT
PGRVIDHLERGSLDLSDLQTLVLDEADEMLRMGFAEEVDRILASTPDTKQTALFSATMPP
AIRRISAQYLNAPEEVAVARQSTTSATIRQRYLQVGHQWKFEALSRILETEEHDGVIAFV
RTRAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKAGRVDILVATDVAARGLDVE
RISHVVNYDIPQDAESYVHRIGRTGRAGRQGDAVLFMTPRERFLLKQIERTTRQQVEEMA
VPSVADVNAARKRRFADGITRTLERASEEELAVFGEIVAAYVDEHEAEPARVAAALGMMA
QGGRPLLAREQEIPFGGARGRKDRDGGREGGRDGGRERGTSDGRGSRGPAREPAAGNATY
WIAVGHQDRVRPGNIVGALANEVGLPASAIGAIDLRGNHSLVELPADLTSAQLEAAANAE
INGRRLGLRKDTGRPTRAERDGEDRGGFRKDRGERGERGGFRGDRDGGQRGGYRKDRDDR
GSREDRGGFRKDRDDRSFRGDRRGRPGGRKPRWGAQERSDRGARR
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacatcctcgatccccagaccaccgccgaggccgcccccgagctcgccgaggcg
gagcaggaggccaccgggaccgtcccgcaggtcgacgccgccgagcccgccgcccccgag
gccccggccgggcccgccggccccaccttcctggacctcggcctggacgcccgcgtgctg
gccgccgtcgaggacctgggctacacccgcccctcgccgatccaggaggcgaccatcccg
ctgctgctggacggccgcgacgtcgtgggcctggcccagaccggcaccggcaagaccggc
gcgttcgcgctgccggccctgtcccgcctcgccgagaccacggacgtgaccgggcgcgcg
gacaccccgcaggtgctcgcgctcgccccgacccgcgagctcgccctccaggtggccgac
gccttcgacagctacgccaagcacctcgacgacgtctccgtgctcgccgtctacggtggc
tccccgtacggcccgcagctggccggactgcgccggggcgcgcaggtcgtcgtcggcacg
ccgggccgcgtgatcgaccatctcgagcgcggctcgctggacctctccgacctgcagacc
ctcgtgctggacgaggcggacgagatgctgcgcatgggcttcgcggaggaggtggaccgc
atcctcgcctccaccccggacacgaagcagaccgccctgttctccgccaccatgcccccg
gccatccgccgcatctccgcccagtacctgaacgccccggaggaggtggccgtcgcccgt
cagtcgacgacgtccgccaccatccgccagcgctacctccaggtgggccaccagtggaag
ttcgaggccctgagccggatcctcgagaccgaggagcacgacggcgtcatcgccttcgtg
cgcacccgtgccggcaccgaggagctcgcccagaagctcacgcgcgccgggttcaaggcc
gtggccatctccggcgacatcgcccagaagcagcgcgagaagaccgtcgaggacctgaag
gccggccgcgtggacatcctcgtggccaccgacgtcgccgcccgcggcctggacgtcgag
cgcatctcgcacgtggtcaactacgacatcccgcaggacgccgagtcctacgtgcaccgc
atcggccgcaccggccgcgccggccgacagggcgacgccgtgctcttcatgaccccgcgt
gagcgcttcctgctcaagcagatcgagcggaccacccgccagcaggtcgaggagatggcc
gtgccctccgtcgccgacgtcaacgcggcccgcaagcgccgcttcgccgacggcatcacc
cgcaccctcgagcgcgcctcggaggaggagctggcggtgttcggtgagatcgtcgccgcg
tacgtcgacgagcacgaggccgagccggcgcgcgtggccgccgcactgggcatgatggcc
cagggcggccgcccgctgctggcccgcgagcaggagatcccgttcggcggcgcccgcggc
cgcaaggaccgcgacggcggccgcgagggtgggcgcgacggcggccgtgagcgcggcacg
agtgacggccgcggctcgcgtggcccggcccgggagcccgcggccggcaacgcgacgtac
tggatcgccgtcggccaccaggaccgcgtgcggccgggcaacatcgtgggcgcgctggcg
aacgaggtgggcctgcccgcctccgccatcggcgcgatcgacctgcgcggcaaccactcg
ctcgtcgagctgccggcggacctgacctcggcccagctcgaggccgcggccaacgcggag
atcaacggccgtcgcctcggcctgcgcaaggacaccggtcgcccgacccgcgccgagcgc
gacggcgaggaccgcggcggcttccgcaaggaccgcggcgagcgcggcgagcgcggcggc
ttccgcggggaccgcgacggcggccagcgcggcgggtaccgcaaggaccgggacgaccgc
ggctcccgcgaggatcgtggcggcttccgcaaggaccgggacgaccgcagcttccgtggc
gaccgcaggggacgccccggcggccgcaagccccgctggggcgcccaggagcgctcggat
cggggcgcccgccgctga
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