Myotis yumanensis (Yuma myotis): 139004209
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Entry
139004209 CDS
T10762
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
myum Myotis yumanensis (Yuma myotis)
Pathway
myum04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
myum00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
139004209 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
myum04147
]
139004209 (COL18A1)
00535 Proteoglycans [BR:
myum00535
]
139004209 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
myum00536
]
139004209 (COL18A1)
Exosome [BR:
myum04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
139004209 (COL18A1)
Proteoglycans [BR:
myum00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
139004209 (COL18A1)
Glycosaminoglycan binding proteins [BR:
myum00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139004209 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Laminin_G_3
LDL
Motif
Other DBs
NCBI-GeneID:
139004209
NCBI-ProteinID:
XP_070263160
LinkDB
All DBs
Position
Unknown
AA seq
1489 aa
AA seq
DB search
MAPDPSGRLGLPLPLLLLLTCCLAATRADLLDWLWTTNTDQPTTSPVPVAPSSPPVQPTE
DTTTQVAPQDGPTEQGTAPTSPELPLESLEAGQGEASTARPASSASPDTKEENLAGVGAM
ILNVAMGIRSFVQLWGNSTPAENATGMEMPTLATPTGPLTFPVPSSAPQENGTTSWLTGG
ALSSPDTKRTEASSLPVPTQPLPSPDRPRTLLGEPSVPPKSPERVVTEVGLLQLLGEPPP
QQVTQIDDPDVGPAYVFGPDANSGQVARYHFPSPFFRDFSLFFHVQPATEAAGVLFAITD
AAQAVVSVGVKLSAVSDGQQYIQLLYTEPGAARTRTAASFALPAFTGQWTRFALSVDDDT
VTLFVDCEKIQGASLARSPRALELEPGSGFFVAQAGEADPDKFQGMIAELRVRSDPQVSP
MHCLEDDDDDDDGASGDFGSGLAENPELLKKEEGAPLKPSPPEVPPVTSPPLAEGSHSED
SRTEEIEEQTTVSILGAQTLPGSNTVITWDSSHVLEEGLAGPVVQSPHARAVPGPQGPPG
PAGPPGKDGAPGRDGEPGDPGEDGRPGDIGPQGFPGTPGDVGPKGEKGDPGVGPRGPPGP
QGPPGPPGPSFRHDKLTFIDMEGSGFSGDPESLRGPRGFPGPPGPPGVPGLPGEPGRFGV
NSSVIPGPAGLPGVPGRDGQPGIPGPPGPPGTPGKDGRPGEAGQKGSLGKVGTPGPKGSK
GDPGPMGAPGENGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWLTARGADG
LQGPPGKPGAKGDPGIAGPPGTKGEVGADGPPGFPGLPGKEGVAGAQGPKGEKGTQGEKG
DPGKDGVGQPGPPGPPGLPGPVVYVSEEQDRAVSVTHGVKGQPGYAGLPGPAGPKGDTGV
SGQPGPPGPKGEKGEPGMVLSPDGRVLPPAQKGAKGEPGFRGPPGPYGRPGHKGEIGFPG
RPGRPGMNGFKGEKGEPGDASVGFGARGPPGLPGPPGPPGPPGLPGNPVYDSNAFVESGP
VGPPGLPGHQGPSGPKGDKGDVGPPGPPGQFPFDFLQLEAELKGDKGDRGDTGQKGERGE
PGGGFFGSGVPGPPGPPGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPP
GPPGPPSFPGPYRQTISVPGPPGPPGPPGPPGTLGTSSGVRIWPTYQTMLDKVPEVPEGW
LIFVADREELYVRVRNGIRKVLLEARTPLPRGTDNEVAALQPPLVQLHEGNPHPRWELPP
STSRPWRADDILVRPPRLLDPQPYPGVPHHGSYVHSRPAHPTGAPAHTHHDFQPVLHLVA
LNGPQPGGLRGIRGADLQCFQQARAAGLAGTFRAFLSSRLQDLYSIVRRADRATVPIVNL
RDEELFPNWEALFSGSQGQLKPGARIFSFDGRDVLQHPAWPQKSVWHGSDPSGRRLTESY
CETWRTEATTATGQASSMLTGRLLEQKAASCHNAFIVLCIENSFMTSSK
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgaccccagcggccgcctgggcctgccgctgccactgctgctgctgctcacc
tgctgcctcgccgccacccgggcagatctgctggactggctgtggaccactaatacggat
cagcccaccacctcccccgtccccgtggccccaagcagcccacctgtgcagcccacagag
gataccaccacacaggtagcccctcaggatggccccaccgagcaggggacagcacctacc
agccccgagctgcccctggagagtctggaggctggccagggcgaggcctccactgcccgt
cctgcctcctcggcgagcccggacacgaaggaggagaatcttgctggcgtcggagccatg
atcctgaacgtggctatgggtatccggagctttgtccagctatggggtaatagcaccccc
gccgagaacgctaccggaatggagatgccaacacttgcgacccccacaggccccctcacc
ttcccagtgccctccagtgccccccaggagaacgggaccacttcctggctgaccggcggg
gccctgagctctccggacaccaagaggactgaggccagcagcctgccagtgcccacccag
ccactaccctccccggacaggccccggacactactcggggagccctcggtgccaccgaag
tccccagagagagtggtcacagaggtggggctcctccagctgctcggggagcccccgccc
cagcaggtcacccagattgacgaccccgacgtgggaccagcctacgtctttggtccggat
gccaacagtggccaggtggcccggtaccacttccccagcccgttcttccgtgacttctcc
ctgttcttccacgtgcagccggccaccgaggccgcgggggtgctgttcgccatcacggat
gcagcccaggcagtggtctccgtgggcgtgaagctgtcggccgtgagtgacggccaacag
tacatccagctcctgtacaccgagccgggcgcggcccggacacgcacggcggccagcttt
gccctgcccgccttcaccggccagtggacgcgctttgccctcagtgtggacgatgacacc
gtgacgctctttgtggactgcgagaagatccagggggcgtccttggcgcggtccccacgc
gccctggagctggagcccggctccggcttctttgtggctcaggccggagaagcggacccc
gacaagttccaggggatgatcgcggagctgagggtgcgcagtgacccccaggtgagcccc
atgcactgcctggaggacgatgacgacgatgatgacggggcgtcaggggacttcggaagt
gggctggcagagaacccggagcttctcaagaaggaagagggagcacccctaaaacccagc
ccccccgaggttcccccggtcacttctcctcccttggctgaaggcagccactcagaagat
tccagaacagaagaaatcgaggaacaaaccactgtgtctatattgggagctcagaccctt
cctggctcaaatacagtcatcacctgggacagcagccatgtcctggaagagggtctcgca
ggccccgtggtgcagagcccccatgcacgggctgtccctgggccgcaggggccccccgga
cccgcggggccaccagggaaggatggcgcccctggaagggatggtgagccaggcgaccct
ggggaagacggaagacccggtgacataggcccgcagggcttcccgggaaccccaggagac
gtgggccccaagggtgagaagggggatcctggagttgggccaagaggacccccaggaccc
caaggacctccggggccaccaggaccctccttccgacacgacaagctgaccttcatcgac
atggaggggtccgggttcagcggtgaccccgagagccttcggggcccgagaggtttccct
ggcccccctgggccccccggcgtcccaggccttcccggagagccaggccgattcggggtg
aacagctccgtcatcccaggacctgcaggccttcccggtgtgcctgggcgggatggacag
cctgggatccccggccccccaggacctccaggaaccccaggaaaagacgggcggccagga
gaggccggccagaaaggcagccttggcaaagtgggcaccccaggacctaagggaagcaag
ggagaccccggccccatgggtgctcctggagagaacggcttggcaggagcccccggacca
gcaggaccaccaggacccccagggccccccgggcctccaggaccaggacttcccgcgggg
tttgatgacatggaaggctccgggggacccttctggttgacggcccgaggcgctgatggg
ctgcagggacctcccggcaagcctggggccaagggggatcctggaatagctggcccacca
gggaccaagggagaagtcggtgcagacggaccccccgggtttcctggccttcccggcaaa
gagggtgtagctggagcccagggaccaaaaggagaaaaagggacccagggagagaaaggt
gacccagggaaggacggagtggggcagcctgggccccccgggccccctggactcccgggg
cccgtcgtctacgtgtcggaggagcaggacagagcggtgtctgtaacccatggggtcaag
ggccagcccgggtacgcaggcctccccggaccagctgggccgaagggagacacaggcgtc
agtggccagccaggccccccaggacccaagggtgagaagggtgagcccgggatggtcctc
agtcctgacggcagagtgctgccccctgcccagaaaggagccaagggggagcccggcttc
cgaggacctccgggtccatacggacggcctgggcacaaaggagagattggcttccccggg
cgaccgggccgtcctgggatgaatggattcaaaggagagaaaggggagccaggagacgcc
agcgtcggatttggtgcacggggtccacctggcctcccagggcctccagggccaccaggg
ccgccaggccttcccgggaaccctgtctacgacagcaacgcatttgtggagtctggcccc
gtgggacctcctggtttgccagggcaccaggggccttctggaccaaagggggacaaagga
gacgtgggcccgcccgggccaccaggccagttcccgttcgacttcctccagctagaagct
gaactgaagggggacaagggtgaccgaggggacaccgggcagaaaggagaaaggggtgag
cccggtggcggattcttcggctctggtgtgcctggaccccccggcccgccaggctacccc
gggattccgggtcctaaaggagagagcatcaggggccagcctggcccacctggacctcag
ggaccccctggcattggctatgaagggcgccaggggcctccgggacctcctggccctcca
gggcccccagggcccccttcctttcctggcccctacaggcagactatcagcgttcctggc
cccccaggcccacctgggcccccaggaccccctggaaccctgggcacctcctcaggggtg
aggatctggcccacgtaccagaccatgctggacaaggtgcccgaggtgcccgagggctgg
ctcatcttcgtggctgacagggaggagctgtacgtccgcgtccgaaatgggatccggaag
gtcctgctggaggcccggactccactcccgcgtgggacggacaacgaagtggccgccttg
cagcccccgctggtgcagctgcacgagggaaacccgcacccccggtgggaactgcccccc
tccacctcacgaccctggcgggcagatgacatcctggtcaggcccccacgcctgctggac
ccccagccctaccctggagtcccgcatcacggctcctacgtgcactcccggccagcccac
cccactggcgctcccgcccacacccaccatgacttccaaccggtgctgcacctggtcgca
ctcaacgggccacagcctggcggcctgcgtggcatccgaggcgccgacctccagtgcttt
cagcaggcgcgtgcggccgggctggcaggcaccttccgtgccttcctgtcgtcgcgccta
caggacctctacagcattgtgcgtcgtgccgaccgtgccaccgtgcccatcgtcaacctc
agggacgaggagctgtttcccaactgggaggccttgttctcgggctcccagggccagctg
aagccaggggcccgcatcttctcctttgacggcagagacgtgctgcagcaccccgcctgg
ccacagaagagtgtgtggcacggctcagaccccagcgggcgccggctgaccgagagctac
tgtgagacgtggcggactgaggccacaacagccacgggccaggcctcctccatgctgacg
ggcaggctgttggaacagaaagccgcgagctgccacaacgccttcatcgtcctctgcatt
gagaacagcttcatgacctcctccaagtag
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