Myotis yumanensis (Yuma myotis): 139008470
Help
Entry
139008470 CDS
T10762
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
myum Myotis yumanensis (Yuma myotis)
Pathway
myum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
myum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139008470 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myum03019
]
139008470 (MTREX)
03041 Spliceosome [BR:
myum03041
]
139008470 (MTREX)
03009 Ribosome biogenesis [BR:
myum03009
]
139008470 (MTREX)
03016 Transfer RNA biogenesis [BR:
myum03016
]
139008470 (MTREX)
Enzymes [BR:
myum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139008470 (MTREX)
Messenger RNA biogenesis [BR:
myum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
139008470 (MTREX)
Spliceosome [BR:
myum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
139008470 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
139008470 (MTREX)
Ribosome biogenesis [BR:
myum03009
]
Eukaryotic type
Pre-60S particles
Helicases
139008470 (MTREX)
Transfer RNA biogenesis [BR:
myum03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
139008470 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
139008470
NCBI-ProteinID:
XP_070267844
LinkDB
All DBs
Position
Unknown
AA seq
1040 aa
AA seq
DB search
MADAFGDELFSVFEEDSAAAPGSRKDKDKGKWKGPPGPAEKAGKHSDGNLQSESTSVGKA
KRNVDFEGTDEPIFGKKPRVEESVTEDLSLADLMPRVKVQSVETVEGCTHEVALPADEDY
IPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREK
QRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEV
MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQ
PCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLREAGDLAKGDQK
GRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEE
VFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT
ETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEK
MSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVV
EKVRNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKV
KNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSRESLKNSATEAAKPAKPEE
KGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDD
MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKA
RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSA
EQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSF
KPHLMDVVHTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENK
FAEGITKIKRDIVFAASLYL
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccttcggggatgagctcttcagcgtgttcgaggaagactccgccgctgcg
cctggaagcaggaaggacaaggacaaggggaaatggaaggggcctccggggccggcggag
aaggccgggaaacattctgatgggaatttacaatccgagtcaaccagtgttggaaaagcc
aagagaaatgtggattttgaaggcacagatgaacccatttttggaaagaagcctagggta
gaagagtcagtaactgaagacttaagtttggctgacttgatgcccagggtgaaggtgcag
tcagttgaaactgttgaagggtgtacgcatgaggttgcacttcctgcagatgaagattat
ataccacttaaaccacgagttggaaaagctgcgaaggaatacccgttcattcttgacgct
tttcagagagaagccatccagtgtgttgacaataatcagtctgttttagtgtctgcacat
acgtcagccggaaaaactgtttgcgccgagtatgccatcgcattggccttaagggaaaaa
cagcgtgtaatatttaccagcccgattaaggctctgagtaaccagaagtaccgtgaaatg
tatgaagaatttcaagatgtgggtctgatgacgggagatgttactattaatcctacagca
tcttgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttctgaagtt
atgcgcgaggttgcttgggtcatattcgatgaaattcattacatgagagattcagagcgt
ggtgtggtgtgggaagaaactatcattttgcttcctgataatgtccactatgtctttctc
tcggctactattccaaatgcccgacagtttgccgaatggatttgccatttacataagcag
ccttgccatgtgatttacacggattaccggcctactccactgcagcactacatcttcccg
gcggggggggacggcctgcaccttgtggttgatgaaaacggtgacttccgagaagataac
ttcaacaccgcaatgcaagttctccgcgaggcaggggacctggcaaaaggagatcagaag
ggtcggaaaggagggacaaaaggaccatcaaatgtgttcaagattgtgaagatgattatg
gaaagaaattttcaacctgtaattattttcagtttcagtaagaaagattgtgaagcctat
gcacttcaaatgaccaaattagatttcaacacagatgaagaaaagaagatggtggaagaa
gtattcagtaatgcgattgactgcttgtcggatgaagataaaaagctccctcaggttgaa
catgtgcttcctcttttgaagcgggggattggcatccaccacggtggtttacttcctatt
ttgaaagaaaccatagaaatcctcttttctgaaggattgataaaggcgttatttgcgacg
gagacttttgccatgggaattaacatgccggctaggacagttttatttacaaatgcccga
aaatttgatgggaaagactttcgatggatttcttctggtgaatacattcagatgtctggt
cgtgccggaaggaggggcatggacgacagaggaatcgtgattcttatggttgacgaaaag
atgagcccaactattgggaagcaactgcttaagggctcagccgaccccctgaacagtgct
ttccatttaacctacaacatggttctgaacctgctgcgtgtggaagaaatcaatcccgag
tacatgctggagaagtccttctaccagtttcagcattacagagccatccccggggtggtg
gagaaggtgcggaactcggaagaacaatataataaaatagtgatacccaatgaagaaagc
gtggtcatctattacaagatcaggcagcagcttgccaagctgggtaaagaaattgaagaa
tatattcacaaaccaaaatattgcttaccatttctacaaccaggtcgtttggtaaaggta
aagaatgaaggagatgattttggctggggagtagtcgtgaatttctccaaaaagtcaaat
gttaagcccaactccggggagctcgacccgctgtatgtggtggaagtgcttctgcgctgc
agccgagaaagcttgaaaaactccgctacggaggctgcgaagccggccaagcccgaggag
aagggggagatgcaggttgttccagtcttggtgcatctcctgtctgctatcagcagtgtt
cggctctacattcccaaagaccttcggcccctggacaacagacagagcgttctcaagtcg
atacaggaagttcagaaacggtttccggatggtgttcccttattggaccctatcgatgac
atgggcattcaagaccagggcctgaagaaggtcatccagaaagtggaggcgttcgagcac
cgcatgtactctcaccctcttcacaacgacccgaacttggaaaccgtgtacacgctctgt
gaaaagaaagcacagatcgcaatagatattaaatctgcaaagcgagagctcaagaaagca
agaacagtcctgcagatggacgaactcaagtgccgcaaacgcgtgctccggcgcctgggg
tttgccacttcctccgacgtcatagagatgaagggacgagtggcctgtgagatcagcagt
gccgacgagctcctgctcaccgagatgatgttcaacggcctgttcaacgacctgtccgcg
gagcaggccaccgccctgctgagctgcttcgtgttccaggagaattccagtgagatgccc
aagctcaccgagcagttggcggggccccttcgccagatgcaggaatgtgctaaacgaatt
gcaaaagtttcagcagaagccaaattggaaattgatgaggaaacgtacctgagctccttc
aaacctcacttaatggatgtagtgcacacctgggccacgggggcgacatttgcccacatc
tgcaaaatgacagatgtctttgaaggcagcatcatccgctgcatgcggcgcctggaagag
ctgctgcggcagatgtgtcaggcggcgaaagccatcgggaacactgagctggagaacaag
ttcgccgaaggcatcaccaaaatcaagagagacattgtgtttgccgccagcctctacctg
tag
DBGET
integrated database retrieval system
