Myotis yumanensis (Yuma myotis): 139011152
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Entry
139011152 CDS
T10762
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
myum Myotis yumanensis (Yuma myotis)
Pathway
myum03013
Nucleocytoplasmic transport
myum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
myum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139011152 (UPF1)
03015 mRNA surveillance pathway
139011152 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myum03019
]
139011152 (UPF1)
Enzymes [BR:
myum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
139011152 (UPF1)
5.6.2.5 RNA 5'-3' helicase
139011152 (UPF1)
Messenger RNA biogenesis [BR:
myum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
139011152 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
139011152 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
139011152
NCBI-ProteinID:
XP_070272581
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGPG
VPVGAGAGAAAGQLDVQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQLGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPSSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcactttcctggacaccgaggag
gctgagcttctcggcgccgacacccaaggctccgagttcgagttcacagacttcaccctc
cccagccagacgcagacgcctcccggaggccccggcggacccggaggtggcggcccggga
gtcccggtcggcgcgggtgctggcgctgcggccggacagcttgacgttcaggttggagga
cctgagggcatcctacagaatggggctgtggatgacagtgtggccaagaccagccagttg
ctggccgagttgaacttcgaagaagatgaagaagatacctattacacaaaggacctacca
gtacatgcctgcagttactgtggaatacatgatcctgcttgcgtggtttactgtaatacc
agcaagaagtggttctgtaacggacgtggaaatacttctggcagccacattgtaaatcac
cttgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggccccttggtgagaca
gtcctggagtgttacaactgtggctgccgcaacgtcttcctgcttggcttcatccctgcc
aaggctgactcagtggtggtgctgttgtgcaggcagccctgtgccagtcagagcagcctc
aaggacatcaactgggacagctcgcagtggcagcccctgatccaagatcgctgcttcctc
tcctggctggtcaagatcccttcagagcaggagcagcttcgggcccggcagattacagcc
cagcaaatcaacaagttggaggagctttggaaggagaacccttctgccaccttggaggac
ctagagaagcccggagtggatgaggagccgcagcatgtcctcctgcggtatgaggatgcc
taccagtaccagaacatatttgggcctctggtcaagctggaggctgactatgacaagaaa
ctgaaagagtcacagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttacccaagactgactctggtaatgaggatttagtcata
atttggttaagagacatgcggctcatgcaaggggatgagatatgcctgcggtacaaaggg
gacctggcgcccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggc
gatgagattgccattgagctgcggagcagtgtgggtgcacctgtggaggtgacacataac
ttccaggtggatttcgtgtggaaatccacctcatttgacaggatgcagagtgcactgaaa
acgtttgctgtcgatgaaacctctgtgtcaggctatatctaccataaactgctcggccac
gaggtggaggacgtcatcatcaagtgccagctgcccaagcgcttcactgcacaggggctg
cccgacctcaaccactctcaggtttatgctgtgaagactgtgctgcaaagaccgctgagc
ctgatccagggaccaccaggaacagggaagacagtgacctctgccaccattgtctaccac
ctggcacggcagggcaatgggcctgtgctcgtctgtgctccaagtaacatagctgtggat
cagctgactgagaagatccaccagactgggctgaaagttgtgcggctctgcgctaagagc
cgcgaggccattgactccccagtgtccttcctggccctgcacaaccagatcaggaacatg
gatagcatgccagagctgcagaagctgcagcagctaaaggacgagactggggagctgtca
tctgccgatgagaagcggtaccgagccctgaagcgcacagctgaaagggagctgctcatg
aacgcggacgtcatctgctgcacatgtgtgggtgcaggagaccccaggcttgccaagatg
cagttccgctccattcttatcgacgagagcacccaggccacggagccagagtgcatggtc
cctgtggtccttggagccaagcagctgatccttgtgggtgaccactgccagctgggcccc
gtggtgatgtgcaagaaggcagccaaggccgggctgtctcagtcactgttcgagcgcctg
gtggtgctcggcattcgtccaatccgcctgcaagtccagtatcggatgcaccctgcactc
agtgccttcccatccaacatcttctatgagggctctctgcagaacggcgtcactgcagcg
gatcgagtgaagaaggggtttgacttccagtggccccaacctgataagccgatgttcttc
tatgtgacccagggccaggaggagatcgccagttcgggtacctcctacctgaacaggacg
gaggctgcaaatgttgagaagatcaccacgaagttgctgaaggcaggtgccaagccggac
cagattggcatcatcacaccctatgagggccagcgctcctacctggtgcagtacatgcag
ttcagcggctccctgcacaccaagctgtaccaggaggtggagattgccagtgtggatgca
ttccaggggcgtgagaaggacttcatcatcctttcctgtgtgcgagccaacgagcaccaa
ggcatcgggtttttaaatgaccctaggcggcttaacgtggccctgacccgagcaagatac
ggagtcatcattgtgggcaaccctaaggccctgtccaagcagcccctgtggaaccacctg
ctgaattactacaaggagcagaaggtgctggtggaggggcctttgaataacctgcgagag
agcctcatgcagttcagcaagccccggaagctggtcaacaccatcaaccctggagcccgc
ttcatgaccacagccatgtatgatgcccgggaggccatcatcccaggatcggtctatgat
cggagcagccagggccggccctcgaacatgtacttccagacccacgaccagctcggtatg
atcagtgctggccccagccatgtggccgccatgaacattcccatccccttcaacctggtc
atgccacccatgccaccaccagggtattttggacaggctaatgggccagctgcaggccga
ggcaccccaaaaggcaagacgggtcgtggtggacgccagaagaaccgctttggccttcct
gggcccagccagacgaacctgcccagcagccaggccagccaggatgtggcatcacagccc
ttctctcagggggccctgacacagggctacatctccatgagccagccctcccagatgagc
cagcctggtctctcccagcctgagttgtcccaggacagttaccttggtgatgaatttaag
tcccagattgatgtggcgctatcgcaagattctacgtaccaaggggagcgggcgtaccag
catggtggagtgacaggactgtctcagtactag
DBGET
integrated database retrieval system
