Mycobacterium sp. VKM Ac-1817D: G155_19605
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Entry
G155_19605 CDS
T03634
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
myv
Mycobacterium sp. VKM Ac-1817D
Pathway
myv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
myv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G155_19605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myv03019
]
G155_19605
03009 Ribosome biogenesis [BR:
myv03009
]
G155_19605
Enzymes [BR:
myv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
G155_19605
Messenger RNA biogenesis [BR:
myv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G155_19605
Ribosome biogenesis [BR:
myv03009
]
Prokaryotic type
rRNA processing factors
G155_19605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
AIY47397
LinkDB
All DBs
Position
complement(4105968..4108997)
Genome browser
AA seq
1009 aa
AA seq
DB search
MAEDAQNDDLSTQTPQEGLPERLRVHSLARVLGTTSRRVLDALAEFDGRQRSAHSTIDKA
DAERVRDALALGSAEPSTEPQPVEQAEPVQVEAVSVIVTETTEVPAEASQAESGAADASE
PDAVLVGDEPESRLILETANIPAAREAHTERADYLPLFVAPQPVSFAPVHIDDEDDDEDE
DADTGTDTDSESDDEQADRPAARRRRRGRRGRGRGRGEQLDDNASDSGPDSDTDTADDQS
DSDQDSDDDSDESDEGNDEDTAAGDGSNRRRRRRRRRKSGSGDNDDVGSPDDPPNTVVHE
RAPRSERSNKGSDDSEIQGISGSTRLEAKRQRRRDGRDAGRRRPPILSEAEFLARREAVE
RTMIVRDKIRTEPPHEGARYTQIAVLEDGVVVEHFVTSAASASLVGNIYLGIVQNVLPSM
EAAFVDIGRGRNGVLYAGEVNWEAAGLGGSNRKIEQALKPGDYVVVQVSKDPVGHKGARL
TTQVSLAGRYLVYVPGASSTGISRKLPDTERQRLKEILKEVVPADAGVIIRTASEGVKEE
DIRSDVERLQQRWTEIEAKAAEVTEKKAGAAVALYEEPDVLVKVIRDLFNEDFSGLIVSG
DEAWETINSYVNTVAPDLVGRLTKYEPAGGADAPDVFAVHRIDEQLAKAMDRKVWLPSGG
TLVIDRTEAMTVVDVNTGKFTGAGGNLEQTVTRNNLEAAEEIVRQLRLRDIGGIVVIDFI
DMVLESNRDLVLRRLTEALGRDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTTCTHCA
GRGIVLHGDPVDTASSSNTGRKTEASGSGGGRRSKRGKRGNARPEPEEVPVVKVPDHPAG
EHPMFKAMAAANGRHHDDESLDEDTAGETPEGEGDEQVTAELVDGTDESTDGEFDVPDAD
ESDDVSDEDEDEDEIDLDDEDLDDDDDDDLDDIDDDSDDDSDEDEDEDDSDEDDSDEFDD
SDDSEDAEPDAAEVDVYQVPEPVVVEAPQSRGRTRRRAAARPAGPPSHE
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaagatgcccagaatgacgacctatcaacccagactccgcaggagggactgccc
gagcgactgagagtccactccctggctcgggtgctcggcacgaccagccggcgcgtcctc
gacgccctggcagagttcgacggccgtcagcgcagtgcccactccaccatcgacaaggct
gacgccgagcgggtccgtgacgcactggccctcggctcggctgagccgtcgaccgagccg
cagccggtcgagcaggcagaaccggtgcaggtcgaggcggtcagcgtcatcgtgaccgag
acaaccgaggttcccgcagaagcatcccaggccgagtccggtgcagccgacgcttccgag
cccgacgccgtcctggtgggcgacgagcccgagtcccggctgatcctggagaccgcgaac
atccctgcggcccgcgaagcgcacaccgagcgcgccgattacctgccgttgttcgtcgca
cctcaacccgtcagcttcgcgccggtgcacatcgacgacgaggacgacgacgaggacgaa
gacgccgataccggcaccgataccgactccgagtcggacgacgagcaggcagatcgtcct
gccgcacgacgccgccgccggggtcgccggggccgcgggcgcgggcgcggtgagcagttg
gatgacaatgcctccgattcgggcccggattccgacaccgacaccgccgacgaccagagc
gattccgaccaggattccgacgacgactccgacgagtcggacgagggcaacgacgaggac
accgcggcaggcgacggcagcaaccgtcgtcgccgtcgtcgccgccggcgcaagtcgggt
tccggggacaacgacgacgtcgggtccccggacgacccgccgaacaccgtcgtgcacgag
cgtgcgccccggtccgagcggtcgaacaagggcagcgacgattccgagatccaggggatc
agcggatcgacccggctggaagccaagcgccagcgccgtcgtgacggccgcgacgcaggt
cgtcgacgccccccgatcctgagcgaggccgagttcctggcccggcgcgaagccgtcgaa
cgcaccatgatcgtgcgcgacaagatccgcaccgagccgccgcacgagggcgcccgctac
acccagatcgccgtgctggaagacggcgtcgtcgtggagcacttcgtcacctcagcggcg
tccgcatctttggtcggcaacatctacctcggcatcgtgcagaacgtgctgccctcgatg
gaggcggcgttcgtggacatcggccggggccgcaacggtgtgctctacgccggtgaggtc
aactgggaggccgcaggcctgggcgggtcgaaccgcaagatcgagcaggccctcaagcct
ggcgactatgtggtcgtccaggtcagcaaggatccggtggggcacaagggcgcccggctc
accacccaggtctcgctggcaggccgctacctggtctatgtgcccggtgcgtcgtcgacc
ggcatcagccgcaagctgcccgacaccgaacgccagcggctcaaggagatcctcaaagag
gtggttcccgccgacgccggcgtgatcatcaggacggcgtcggagggcgtcaaggaagaa
gacatccgttccgatgtcgagcggttgcagcagcgctggaccgagatcgaggccaaggcc
gccgaagtcaccgagaagaaggccggcgcagccgtcgccctctacgaggagcccgacgtt
ctggtcaaggtcattcgcgacctgttcaacgaggacttctccggcctgatcgtctccggc
gacgaggcctgggagaccatcaactcctatgtgaacaccgtcgcacctgacctcgtgggc
aggctcaccaagtacgaaccggccggtggcgccgacgctcccgacgtgttcgcggtgcac
cggatcgacgagcagctggccaaggcgatggaccgcaaggtgtggctgccctcaggtgga
accctcgtcatcgaccgcaccgaggcgatgaccgtcgtcgacgtcaacaccggaaagttc
accggtgccggtggcaacctcgaacagaccgtcacccgcaacaacctggaagccgctgag
gagatcgtcaggcaactgaggttgcgcgacatcggcggcatcgtggtcatcgacttcatc
gacatggtgctcgaatcgaaccgggatctggtgctgcgtcggctgaccgaggcgctgggg
cgtgaccgcacccgccatcaggtgtcagaggtgacttcactgggtctcgtgcagctgacc
cgaaagcggttgggaaccggtctggtcgaggcattctcgaccacctgcacgcactgtgcg
ggccgcggcatcgtgctgcacggcgacccggtcgacacggcgtcgtcatcgaacaccgga
cgcaagacagaagccagtggcagcggcggcggccgccgcagcaagcgcggcaagcgcggc
aatgcccgccccgagcccgaagaggtgcccgtcgtcaaggtgcccgaccatccggccggc
gaacacccgatgttcaaggcgatggccgcggccaacggccgtcaccacgacgacgagtcg
ctcgacgaggacactgccggcgagacgcctgaaggcgaaggcgacgagcaggtcacggcc
gagctcgtggacggcaccgacgaatccaccgatggtgagttcgacgtgccggacgccgat
gagtccgacgacgtctcggacgaggacgaagacgaggacgagatcgacctcgatgacgag
gacctcgacgatgacgacgatgacgacctggacgacatcgacgatgattcggatgacgac
tccgatgaggacgaggacgaggacgactcagatgaggacgactcggacgagttcgacgac
tccgacgattctgaggacgctgagcctgatgcggcggaagtggacgtctaccaggtaccc
gagcccgtggtagtcgaggcaccgcagagccgcggccgcactcggcgacgtgccgcggca
aggccggcggggccgccgagccatgagtag
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