Mycobacterium sp. MS1601: BVC93_17200
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Entry
BVC93_17200 CDS
T10274
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
myw Mycobacterium sp. MS1601
Pathway
myw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
myw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BVC93_17200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
myw03400
]
BVC93_17200
Enzymes [BR:
myw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BVC93_17200
DNA repair and recombination proteins [BR:
myw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BVC93_17200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
LSDAT_prok
MFD_D3
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AQA03878
UniProt:
A0A1P8XC47
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All DBs
Position
3529666..3533313
Genome browser
AA seq
1215 aa
AA seq
DB search
MTAPGHPSVQTPIAGLVDLALTAPTFADLIDRAAQRPEELKLVGPSSAQLFVAAALAQQG
PLLVVTATGREADDLTAELRGAFGDAVAMFPSWETLPHERLSPGVDTVGARLMLLRRLAH
PDDGQLGPPLRVVVTTARSLLQPMTPGLSDVEPVTLAVGAELDFDQTIHRLVELAYTRVD
MVGKRGEFAVRGGILDVFAPTAEHPVRVEFWGDEITEMRLFSIADQRSITEIPTDHVVAV
PCRELLLTEGVKERAAMLAGSMPATDNTVAGSVGDMLAKLSEGIPVDGMEALLPVLVPDE
PALLTDQLAPGTPVLVCDPEKVRTRAADLINTGREFLEASWSVAAIGGDAPIDVEQLGGS
GFRELGEVRAQARKAGHPWWTLSQLPDESAIELEVRSAPSARGSQANAEEIFAMLRAHCA
TGGLAAVVTPGTGTANRVCEQLADADTPASLLESGDQPKPGVVGVLKGPLHTGVILPGAN
LVVITETDLTGNRVAASEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGKFVEMTERVVG
GARREYLVLEYASAKRGGGSDRLYVPMDSLDQLSRYVGGQAPTLSKLGGSDWANTKTKAR
KAVREIATELVALYAKRQAAPGFAFPPDTPWQNEMEDAFGFTETVDQMTAITEVKADMER
PVPMDRVICGDVGYGKTEIAVRAAFKAVQAGKQVAVLVPTTLLADQHLQTFTNRMAGFPV
TVKGLSRFTDPAESRQVVDGMADGSVDIVIGTHRLLQTGVRWKDLGLVIVDEEQRFGVEH
KEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV
GAALRRELLRDGQAFYIHNRVSSIDSAAAKVRALVPEARVVVAHGQMPEEQLERTVEGFW
NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYSP
DKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL
VGEAVEAYRAAADGETVSGTEEAKEVRIDLPIDANLPPEYIGSDRLRLEGYRRLAAATSD
ADVAAVVEELTDRYGPLPDEAARLVAVARLRLLCRSYGITEVSATGAAGQPSTLRISPLT
LLDSGQLRLKRMYPGGTYRATTSTIQVPIPRAGSGIAAPRIRDLELAQMVADLVLALDGK
PKGEVDITKLEGVAP
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcacccttctgtccagaccccgatcgcgggtctcgttgatctggcg
ctcaccgcgcccaccttcgccgacctgatcgaccgcgctgcgcagcgccccgaggaactg
aagcttgtcggccccagcagcgcccaattgttcgtcgccgctgctctggcgcagcaaggc
ccgctgttggtggtcaccgccaccggccgggaggccgacgacttgaccgccgaactgcgc
ggcgcattcggcgacgctgtggcgatgttcccgtcctgggagacgctgccgcacgaacgc
ctgtcaccaggggtggacaccgtcggcgcgcggctgatgctgctgcgccgtctcgcccac
ccggacgacgggcaactgggaccgccgctgcgggtggtggtgacaacggctcgctcactg
ctgcagccgatgacgccggggttgtccgacgtcgagcctgtgaccctggccgtcggcgcg
gaactggacttcgaccagaccatccaccggctggtggaactggcctacacccgtgtcgac
atggtgggcaagcgcggcgagttcgcagtgcggggcggcattctcgacgtgttcgcaccg
acggccgagcatccggtgcgggtggagttctggggcgacgagatcaccgagatgcggctg
ttctccatcgcagaccagcgttctatcaccgagatccccaccgaccacgtggtggcggtg
ccgtgccgggaactgctgctcaccgagggtgtcaaggagcgcgccgccatgctggccggc
agtatgcccgccaccgacaacaccgtcgcgggcagcgtgggcgacatgctcgccaagctc
tccgaaggaatcccggtggacggcatggaggcgctgttgccggtgctggttcccgacgag
ccggcgctgctcaccgaccagctggccccgggaacaccggtgctggtgtgcgatccggag
aaggtgcgtacccgcgccgcggatctgatcaacaccggccgcgaattcctcgaggcgtca
tggtcggtggccgccatcggcggtgacgcgcccatcgacgtcgaacagctcggcggctcg
gggttccgggagctgggcgaggtgcgtgcgcaggcccgcaaggccggccacccctggtgg
acgctgagtcagttgcccgacgaatccgcgatcgagctcgaggtcagatcagccccgtcg
gcgcgcggcagccaggccaatgccgaagagatcttcgcgatgctgcgggcgcactgcgcc
accggcgggttggccgccgtcgtcactcccggcaccggcaccgccaaccgagtgtgtgaa
cagctggccgacgccgacaccccggcatcgcttctcgaatccggtgaccagcccaagccc
ggcgtcgtgggggtgctcaagggcccgctgcacaccggtgtcatcctgcccggcgccaat
ctcgtggtgatcaccgagaccgacctgaccggcaaccgggttgccgcctcggagggcaaa
cgccttgccgccaaacgccgtaacaccgtcgacccgctggcgctgaccgcgggggacctg
gtggtgcacgaccagcacggcatcggcaagttcgtcgagatgaccgagcgggtggtcggc
ggcgcccgccgcgaatacctggtgctcgaatacgccagcgccaagcgcggcggcggatct
gaccggctctacgtgccgatggattcactcgaccagctgtcccgctacgtcggtggccag
gctccgacgctcagcaagctcggcggcagcgactgggccaacacgaaaaccaaggcgcgc
aaggcagttcgtgagatcgccacggagctggtggcgctctacgccaaacgccaagcggcg
ccgggatttgccttcccgcctgacaccccgtggcagaacgagatggaagacgccttcgga
ttcaccgagacggtggatcagatgacggccatcaccgaggtcaaggccgatatggagcgt
ccggttccgatggaccgcgtgatctgcggtgacgtgggctacggcaagaccgagatcgcg
gtgcgggcggcgttcaaagcggtgcaggccggcaagcaggtcgcggtactggtacccacg
acgctgctggccgatcagcatctgcagacgttcaccaaccggatggccggattcccggtg
acggtgaaggggctgtcgcggttcactgatcccgcggaatcccgccaggtggtcgacgga
atggccgatgggtcggtcgatatcgtgatcggtacccaccgactgttgcagaccggggtg
cgctggaaagacctcggactggtgatcgtcgatgaggaacagcgcttcggtgttgagcac
aaggagcacatcaagagcctgcgcacccacgtcgacgtgttgaccatgagcgccaccccg
attccgcgcacgctggagatgagcctggcgggcatccgcgagatgtcgaccattctgact
ccgcccgaggagcggtacccggttctgacttatgtgggaccgcacgacgacaagcaggtg
ggtgcggcgctgcgacgggaactgcttcgtgacgggcaggccttctacatccacaaccgg
gtcagctccatcgattccgctgcggccaaggttcgcgcattggtgcccgaggccagagtt
gttgtggcccatggtcagatgcccgaagagcaactggagaggactgtcgagggtttctgg
aaccgtgaatacgacatcctggtgtgcaccaccattgtcgagaccggtctggatatcagc
aacgccaacaccctcatcgtggaacgtgctgacacttttggcctttcccagctgcaccag
ttgcgtggccgagttggacgcagtcgcgaacgtggttatgcctacttcctgtactcaccg
gacaagccgttgaccgagacggcctatgaccggttggccaccatcgcccagaacaacgaa
ctcggtgcgggtatggccgtggcgatgaaagacctcgagatccgcggcgccggcaacgtg
ttgggtgccgagcagtcagggcatgtcgcaggtgtgggtttcgacctgtacgtccgtctg
gtgggtgaggccgtcgaggcataccgggctgctgccgacggtgaaacagtctccggcaca
gaggaagccaaggaagtccggatcgatctgccgatcgacgccaacctgccgccggagtac
atcggcagtgaccgcctgcggctggagggttatcgccggctggcggcggccaccagcgac
gccgacgtggcggcagttgtcgaggaactcaccgaccggtacggcccgctgcccgacgag
gcggcgcggctggtggcggtggcgcggctgcggctgctgtgccgcagctacggcatcacc
gaggtgtcggccaccggtgcggcgggtcagccctcgacgctgcggatttcgccgttgacg
cttctggactcaggtcagctgcggctcaagcgcatgtatccgggcggaacctaccgcgcc
accacctcgaccatccaggtgccgattccgcgggcgggcagtgggattgccgcaccacgc
atccgtgatctcgagctggcgcagatggtggccgatctggtgttggcattggacggaaag
ccgaagggcgaagtcgatataaccaagctcgagggggtggcaccgtga
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integrated database retrieval system
