Myxococcus sp. MxC21-1: QEG98_00345
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Entry
QEG98_00345 CDS
T09754
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
myx
Myxococcus sp. MxC21-1
Brite
KEGG Orthology (KO) [BR:
myx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
myx03016
]
QEG98_00345
Enzymes [BR:
myx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
QEG98_00345
Transfer RNA biogenesis [BR:
myx03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
QEG98_00345
Prokaryotic type
tRNA splicing ligases
QEG98_00345
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF6301
Motif
Other DBs
NCBI-ProteinID:
WNZ62348
LinkDB
All DBs
Position
complement(72714..74066)
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AA seq
450 aa
AA seq
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MSWKQRLEKVSEGHYVLAKTKSMKVDADLFLSDKLLWGEGPEQPGLEDSVFDQVVNAASF
PGVTRVAVTPDCHLGYGVPIGTVVETDGILLPTAAGYDIGCGMVQLQTTLTAEDVADATK
RRRWIEEVTKRIAVGVGASRVQKQRRVTDRTFSDVVRHGAKALGRGSSVTERDYIPVEDD
RVDIPERAFGKREQLGSLGGGNHFTEMQVDQDGRVWVMLHTGSRGFGWNIAKHFFVEGAA
RLGLKSRSEDHVWLDAESPLGRDYWNLHNMAANFAVANRLIIGEAVCAALEDVFGGTASV
YYEISHNLIQKEAGKFVARKGATRAFPGGHPALKGTPWEKTGHPILIPGSMETGSAILFA
EPGAQKSIYSVNHGSGRRMSRGEARRVLKQDVTDQRMAEAGILLNTRQTPLDESGPCYKN
LDDVLETVEMAGLARVAYRLKPVACIKGAD
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgagttggaagcagcggctggagaaggtctcagagggccattacgtcctggcgaagacc
aagagcatgaaggtcgatgcggacctgttcctgtccgacaagttgctgtggggggagggc
cccgagcaacctggactggaggactctgtctttgaccaggtggtgaatgcggcatccttc
cccggggtcacccgcgtcgctgtcacccccgactgtcacctgggctacggcgtccccatt
ggcacagtggtggagacggacggcatcctcctgcccaccgccgccggctacgacatcggc
tgcggcatggtgcagttgcagacgacgctcaccgccgaggacgtcgccgacgccacgaag
cgccgccgctggattgaagaggtgacgaagcgcatcgccgtgggcgtgggcgccagccgc
gtgcagaagcagcgcagggtgacggaccgcaccttctcggacgtggtgcgccacggcgcc
aaggccctgggccggggttcgtccgtcaccgagcgcgactacatccccgtcgaggacgac
cgggtggacatccccgagcgcgccttcggcaagcgtgagcaactgggcagcctgggcggc
ggcaaccacttcaccgagatgcaggtggaccaggacggccgcgtgtgggtgatgctgcac
accggcagccgcggcttcgggtggaacatcgccaagcacttcttcgtggagggcgccgcg
cggctgggcctcaagagccgcagcgaggaccatgtctggctggacgcggagagcccgctg
ggccgcgactactggaacctccacaacatggcggccaacttcgcggtggccaaccggctc
atcatcggtgaggcggtgtgcgcggcgctggaggacgtcttcggcggcacggccagcgtg
tattacgaaatctcccacaacctcatccagaaggaggcggggaagttcgtcgcccgaaag
ggcgccacgcgcgcgttccccggaggacaccccgcgctgaagggcacgccctgggagaag
acgggccaccccatcctcatcccgggctccatggagacgggcagcgccatcctcttcgcc
gagccgggcgcacagaagtccatctattcggtgaatcacggctccggccgccgcatgtcg
cgtggcgaggcgcggcgcgtgctgaagcaggacgtcaccgaccagcgcatggccgaggcg
ggcatcctcctcaacacccgccagacgccgctggacgagtcaggcccctgctacaagaac
ctggacgacgttttggagacggtggagatggcggggctggcccgggtggcctaccggctc
aagccggtggcctgcatcaagggcgcggactga
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