Myxococcus sp. MxC21-1: QEG98_16470
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Entry
QEG98_16470 CDS
T09754
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
myx
Myxococcus sp. MxC21-1
Pathway
myx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
myx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QEG98_16470 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
myx03021
]
QEG98_16470 (rpoC)
03400 DNA repair and recombination proteins [BR:
myx03400
]
QEG98_16470 (rpoC)
Enzymes [BR:
myx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QEG98_16470 (rpoC)
Transcription machinery [BR:
myx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QEG98_16470 (rpoC)
DNA repair and recombination proteins [BR:
myx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QEG98_16470 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
WNZ65085
LinkDB
All DBs
Position
3510799..3515010
Genome browser
AA seq
1403 aa
AA seq
DB search
MKDIFNFFEKPKDPLSFNAIRIALASPDKIRQWSHGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECNCGKYKRMKHRGVVCEKCGVEVIQSKVRRERLGHITLATPVAHIWFLKSL
PSRIGNLLDITLKELEKVLYCESYIVLDPKATPLQKGELISEDKMHRLYQEHGEDSFTTG
MGGEAVREMLKSLDVEKLSEELRKDMRETTSEAKRKKYAKRLKVAEAFRVSGNKPEWMML
DVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLQELNAPDIIIRNEKRML
QEAVDALFDNGRRGKTITGPNKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELRLHQCGLPKIMALELFKPFIYNKLEEKGYVTTIKSAKKMVEKERPEVWDILEDVIREH
PVLLNRAPTLHRLGMQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQME
ARVLMMSTNNILSPANGKPIIVPTQDMVLGIYYMTRAREFANGEGRVFASPDEVRAAYDH
GEVHLQAKVVCRIDGKRKETTVGRVLLWEVVPRAVGFDAINKVLDKKSLGGLIDLCYRLT
GEKETVLLADRVRSLGYYNATRAGISIALKDMIIPAKKQVFLDEARAVVSEIENQYLEGL
ITDGERYNKVIDIWAEITEKVAQEMMQQISQEETSGDRDGKRETRKQPSFNPIYIMADSG
ARGSAQQIRQLAGMRGLMAKPSGEIIETPITANFREGLSVLQYFISTHGARKGLADTALK
TANSGYLTRRLVDVAQDAIINEYDCGTMDGLFIGALVEGGEIIEPLGERILGRVALDDIL
DPVTGEVLVRANEEIDEDRVRRIENSGMDKVKIRSVLTCQAKRGICVECYGRDLARGRKV
SVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAATRRAEQSSLENRYAGSVKFAGLVTVQKT
DGTLVAMNRNGEIVVVDDSGRERERYQVIYGARILVKEGQRIEPGVLMAEWDPFAIPLLT
EVGGVVRYEDIIEGVTMSEALDEVTGLSRKTVIESKDPEARPRVTIRDANGNMMDLPSSR
NPASYFLPQGSIITVNDGDEIHPGEVIAKVPRETTKTKDITGGLPRVAELFEARKPKDAA
AIAEIDGVVSFGKDTKGKRKLIITPEVNGEQRTDLAKEYLISKGKNISVHSGDRVKAGEA
MMDGSANPHDILKVLGEKELARYLVDEVQEVYRLQGVKINDKHIETIVRQMLRRVRVTDV
GDTNFLVDEQVEKWVFEEENEKVMSEGKRPAVGEPLLLGITKASLSTESFISASSFQETT
KVLTEAAINGKVDYLRGLKENVIMGRLIPAGTGLPNYKHLDIAVESPTDEVNEMEAALAA
THGDTGPLGEPSRPVGTQTTGAA
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggacattttcaacttcttcgagaagccgaaggacccgctgtcgttcaacgccatc
cgcattgcgctggcgtcgcccgacaagattcgccagtggtcccatggcgaggtgaagaag
ccggagacgatcaactaccgcacgttcaagccggagcgggacgggctcttctgcgcccgc
atcttcgggccggtgaaggactacgagtgcaactgcggcaagtacaagcgcatgaagcac
cgcggcgtagtgtgcgagaagtgcggcgtggaggtcatccagtccaaggtgcgccgtgag
cgcctgggccacatcaccctggccacgccggtggcccacatctggttcctcaagtcgctg
ccgagccgcatcggcaacctgctcgacatcacgctgaaggagctggagaaggtcctctac
tgcgagagctacatcgtcctcgatccgaaggcgacgccgctgcagaagggcgagctcatc
agcgaggacaagatgcaccggctctaccaggagcacggtgaggactccttcaccacgggc
atgggcggcgaggccgtccgcgagatgctcaagtcgctggacgtggagaagctgtccgaa
gagctgcgcaaggacatgcgcgagaccaccagcgaggcgaagcggaagaagtacgccaag
cgcctgaaggtggccgaggcgttccgcgtctctggcaacaagccggagtggatgatgctg
gacgtgattccggtgattccgccggacctgcgtccgctcgttcccctggacggtggccgc
ttcgcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgtctg
aagcgcctccaggagctgaacgctccggacatcatcatccgcaacgagaagcggatgctg
caggaggccgtggacgcgctgttcgacaacggccgtcgcgggaagaccatcacgggcccc
aacaagcgcccgctgaagtcgctgtccgacatgctcaagggcaagcagggccggttccgc
cagaacctgctcggcaagcgcgtggactactcgggccgctccgtcatcgtggtgggcccc
gagctgcgcctgcaccagtgcggtctgccgaagatcatggcgctcgagctcttcaagccg
ttcatctacaacaagctcgaagagaagggttacgtcaccaccatcaagtccgcgaagaag
atggtggagaaggagcgtcccgaggtctgggacatcctcgaggacgtcatccgcgagcac
ccggtgctcctcaaccgcgcgcccacgctgcaccgtctgggcatgcaggccttcgagccc
gtgctgattgaaggcaaggccatccagcttcacccgctggtgtgcgccgccttcaacgcc
gacttcgacggcgaccagatggccgtgcacgtgccgctctccatcgaggctcagatggag
gcccgcgtgctgatgatgtcgacgaacaacatcctcagccccgcgaacggcaagcccatc
atcgtcccgacgcaggacatggtgctcggcatctactacatgacccgcgcccgcgagttc
gccaacggcgagggccgcgtgttcgcctcgccggacgaggtgcgtgccgcgtacgaccac
ggtgaagtgcacctccaggcgaaggtcgtctgccgcatcgacggcaagcgcaaggagacc
accgtcggccgcgtcctcctctgggaggtcgtcccccgcgcggtgggcttcgacgccatc
aacaaggtgctcgacaagaagtcgctcggcggcctcatcgacctctgctaccgcctcacg
ggtgagaaggagacggtgctgctcgcggaccgcgtgcgcagcctcggctactacaacgcc
acccgcgccggtatctccatcgcgctcaaggacatgatcatccctgcgaagaagcaggtg
ttcctggacgaggcgcgcgcggtggtgtcggagatcgagaaccagtacctcgagggtctc
atcaccgacggcgagcgctacaacaaggtcatcgatatctgggcggagatcaccgagaag
gtcgcccaggagatgatgcagcagatctcccaggaggagacgtccggggaccgcgacggc
aagcgcgagacgcgcaagcagccgtccttcaaccccatctacatcatggccgactcgggc
gcgcgtggtagcgcccagcagatccgtcagctggcgggtatgcgtggtctgatggcgaag
ccctccggcgaaatcatcgagacgcccatcacggccaacttccgtgaaggcctctccgtg
ctgcagtacttcatctccacgcacggcgcccgtaagggtctggcggacacggcgctcaag
acggccaactccggttacctcacccgccgtctcgtggacgtggcgcaggacgccatcatc
aacgagtacgactgcggcaccatggacggcctgttcatcggcgccctggtggagggcggc
gagatcatcgagccgctcggcgagcgcatcctgggccgcgtggccctggatgacatcctc
gaccccgtgacgggcgaggtgctggtgcgcgcgaacgaggagatcgacgaggaccgcgtc
cgccgcatcgagaacagcggcatggacaaggtgaagatccgctcggtgctcacctgccag
gccaagcgcggcatctgcgtggagtgctacggccgtgacctggcccgcggccgcaaggtg
tccgtgggtgaggcggtcggcgtcatcgcggcgcagtccatcggtgagccgggtacccag
ctcacgatgcgcaccttccacatcggtggtgcggcgacgcggcgcgcggagcagtccagc
ctggagaaccgctacgcgggtagcgtgaagttcgcgggcctcgtcaccgtgcagaagacg
gacggcacgctggtggccatgaaccgcaacggcgaaatcgtcgtcgtggacgactcgggc
cgcgagcgcgagcgttaccaggtcatctacggtgcccgcatcctcgtgaaggaaggccag
cgcatcgagccgggcgtcctcatggcggagtgggacccgttcgcgattccgctgctgacc
gaggtcggcggtgtcgtgcgctacgaggacatcatcgaaggcgtgacgatgtccgaggcg
ctggacgaggtgaccggtctgtcgcgtaagacggtcatcgagtccaaggacccggaggcg
cgtccgcgcgtcaccatccgcgatgccaacggcaacatgatggacctgcccagctcccgc
aacccggcgagctacttcctgccgcagggctccatcatcaccgtcaacgacggcgatgag
atccacccgggcgaggtcatcgccaaggtgccgcgcgagacgacgaagaccaaggacatc
acgggcggtctgcctcgcgtggccgagctcttcgaggcgcgcaagccgaaggacgcggcg
gcgatcgcggagatcgacggcgtggtgtcgttcggcaaggacaccaagggcaagcgcaag
ctcatcatcacccccgaggtgaacggcgagcagcgcacggacctagccaaggagtacctg
atctccaagggcaagaacatcagcgtccactccggcgaccgcgtgaaggccggcgaggcg
atgatggacggctcggccaacccgcacgacatcctcaaggtgctcggcgagaaggaactc
gcgcgctacctggtggacgaagtgcaggaggtctaccgactgcagggcgtgaagatcaac
gacaagcacatcgagaccatcgtgcggcagatgctccgccgcgtgcgcgtcaccgatgtg
ggcgacaccaacttcctggtcgacgagcaggtcgagaagtgggtgttcgaggaggagaac
gagaaggtcatgtcggaaggcaagcgtcccgccgttggcgagccgctgctgctcggcatc
accaaggcctcgctctccaccgagtccttcatctccgcgtcgtccttccaggagaccacc
aaggtgctcaccgaggccgccatcaacggcaaggtggactacctgcgcggcctcaaggag
aacgtcatcatgggccggctcatccccgccggcacgggtctgccgaactacaagcacctg
gacatcgcggtggagagccccaccgacgaggtcaacgagatggaggccgccctggccgcc
actcacggcgacaccggccccctgggcgagccttcccgcccggtaggcacgcagacgacc
ggcgcggcctga
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integrated database retrieval system
