Myxococcus sp. MxC21-1: QEG98_17005
Help
Entry
QEG98_17005 CDS
T09754
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
myx
Myxococcus sp. MxC21-1
Brite
KEGG Orthology (KO) [BR:
myx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myx03019
]
QEG98_17005 (hrpA)
Enzymes [BR:
myx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QEG98_17005 (hrpA)
Messenger RNA biogenesis [BR:
myx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QEG98_17005 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
T2SSE
AAA_30
AAA_25
NACHT
nSTAND3
FtsK_SpoIIIE
Zeta_toxin
SLFN-g3_helicase
Helicase_RecD
ResIII
Motif
Other DBs
NCBI-ProteinID:
WNZ65176
UniProt:
A0AA96XQD3
LinkDB
All DBs
Position
complement(3627510..3631217)
Genome browser
AA seq
1235 aa
AA seq
DB search
MSGDSPVPTPGGLPTLHFPPELPISSRVEDITAAITAHQVVIVAGATGSGKTTQLPKILL
AMGRGRPRQIGVTQPRRIAATSVAARVARELGTELGTDVGYQIRFEDRSSRQTAVKFMTD
GVLLAQIHSDPLLRRYDTIVLDEAHERSLTIDFLLGWLKRILPRRPDLKVVVSSATIETE
RFSQFFGGAPVIQVEGRTFPVDVLYEPPPEDTELADSVADAVANVLSLDPDGDVLVFLPG
EREIREAQNALNARELRGTVVQPLYARLSAAEQSRVFATIPERRVILATNVAETSVTIPG
IVYVVDTGVARLSRYEPRSGTTRLHIEPVSQASADQRKGRCGRVREDLRAPLRRGELHHA
ARLHRPGNQAHRARGVILRMKSLGLGDVEDFPFLDPPQPRAIAEGWRVLEELGAIEGKER
TLTPLGHQLARFPVDPRIARMILAGAEYGCLDEVLIVAAALNLQDPRERPRELAQKADEL
HRRFRDEHSDFTGLLKLWAFVREAEGRGTSHLRRVCRDNFLSFLRVREWRDVQRQLEETV
RELRLPRKGRGAPARGEALHQALLTGLLSRIGQWNPEQRHFTGAKQTRFMVHPSSALAKK
PPAWVMAFELVETSQLFARTVAKLDPEWLAAAAPHLLKRSYSDPHWSEKSARAIVKENAT
LFGLTVFRERPVPLASRDPAEARLMFLDHALVRGEYRTRGAFQEKNRQVFERVARLRDKA
RRSELLDGEAMLTFFDKRVPADVTDGAAFEVWRRKAEAADPDVLVLSMEDALSHDPGLSP
AHYPDAIKLHGASVPVTYTFDPSAEDDGITLSVPLLLLAQIAPGELDWTIPGWQREKLTA
LLEQLPRAQRKQLGPLPDLVDRLEKELVPFRGPMIPALARAVSRLCGMEVTEESFRADAV
VPYLRITLRVLDAQGKELARGRDVDALLKQHGGHARAALRSAAPASDWERKGLTAWTFGD
LPAVVTRRVGNLEVRSYPALVDRGATVDLVLLETSAAADAATRTGVRRLLMLAARGHVAV
SAARMPTPFPSLDGAPPARGQADAFRALVLARGVDDAFKLTPGAPLPRTKAAFETLVREG
SPRIESAARDWANAVVVTSAELATTLAALKAASRGPSGAAAVRDIRSQLGHLFPANLIEW
IPFVRLLHYPRYLRAAQARLSRAVANPSKDAGKAAPFTPLWETFLARRATVRDQEAAQEL
RWAFEELRVAIFAPEVTTPVSVTVAKVGAALAALR
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcgactcacccgtccccacccccggcggcttgcccaccctgcacttccccccc
gagctccccatctcgagccgggtggaggacatcaccgcggccatcaccgcccatcaggtg
gtcattgtcgcgggggccacaggctcggggaagacgacgcagctgccgaaaatcctgctc
gccatggggcgcggccgcccgcgccagattggcgtcacccagccccggcgtatcgccgcg
acgagcgtggcggcgcgcgtggcacgtgagctcggcaccgagctgggcacggacgtcggg
taccagattcgcttcgaggaccgctcgtcccggcagaccgccgtgaagttcatgaccgac
ggcgtcctgctcgcgcagattcacagcgacccgctcctgcgccgctacgacaccatcgtg
ctcgacgaggcccacgagcgcagcctcaccatcgacttcctgctcgggtggctcaagcgc
atccttcccagacgccccgacctcaaggtggtggtgagctcggccaccatcgagaccgag
cgcttctcacaattcttcgggggggctccggtcatccaggtggagggacgtacctttccg
gtggacgtgctctacgagccacctcccgaggacaccgagctcgcagactccgtcgccgat
gcggtggcgaacgtgctctcgctcgacccggacggggacgtcctcgtgttcctccccggg
gagcgggagatccgcgaggctcagaatgccctgaacgcgcgtgagctccgcggcacggtg
gtgcagcccctgtatgcgcgcctgtcggccgccgagcagtcgcgcgtcttcgccaccatc
cccgagcgccgggtcatcctcgccaccaacgtcgcggagacgtcggtcaccatcccgggg
atcgtgtacgtcgtggacacaggggtggcgcgactgtcgcgctacgagccgcgctccggc
accacgcgcctgcacatcgagccggtctcccaggccagcgccgaccagcgcaaagggcgc
tgcggccgcgtgcgcgaggatctgcgtgcgcctctacgacgaggtgagcttcaccacgcg
gcccgccttcaccgacccggaaatcaagcgcaccgggctcgcggggtcatcctgcggatg
aagtccctcggcctcggtgacgtcgaggacttccccttcctcgacccgccccagccaagg
gccatcgccgagggctggcgggtgctcgaggagctcggggccatcgagggcaaggagcgc
accttgacgccgctcgggcaccagctcgcgcgcttcccggtggacccgcgcatcgcgcgg
atgattctcgctggcgccgagtacgggtgcctggacgaggtgctcatcgtcgccgcggcg
ctcaacctgcaggacccgcgcgagcggccacgggagctcgcgcagaaggcagacgaactg
caccggcgcttccgtgacgagcactcggacttcacggggctcctcaagctgtgggcgttc
gtgcgcgaggccgagggccgggggacgtcccatctgcggcgcgtgtgccgggacaacttc
ctgtccttcctgcgggtgcgcgagtggcgggacgtccagcgccagctcgaggagaccgtc
cgcgagctgcgcctgccgcgcaagggccggggcgccccagcgcgcggggaagccctgcac
caggcgctcctcaccgggctcctgtcccgcatcggccagtggaatccggagcagcgccac
tttacgggcgcgaagcagacgcgcttcatggtccacccctcgtcggcgctcgcgaagaag
ccccctgcctgggtgatggcgttcgagctcgtggagacgtcccagcttttcgcgcgcacc
gtggcgaagctcgacccggagtggctcgcggcggcggccccccacctgctcaagcgcagc
tactccgatccgcactggtcggagaagtccgcgcgcgccatcgtgaaggagaacgcgacc
ctcttcgggctgaccgtcttcagggagcgccccgtgcccctggccagcagggaccccgcc
gaagcacggctgatgttcctcgatcacgccctggtgcggggcgagtaccgcacccgaggg
gcgttccaggagaagaaccgccaggtgttcgagcgcgtggcgcgcctgcgggacaaggcc
cggcgcagcgagctgctcgacggcgaggcgatgctgaccttcttcgacaagcgcgtcccg
gcggatgtgacggacggagcggccttcgaggtctggcgtcgcaaggccgaggcggccgac
cccgacgtgctcgtcctctcgatggaggatgccctctcgcacgacccgggcctgtccccg
gcgcactacccggatgccatcaagctgcacggcgcgtccgtgccggtgacgtacaccttc
gacccctcggccgaggacgacggcatcaccctgagcgtgccgctgctgctgctcgcccag
atagccccgggtgagctcgactggaccatccccgggtggcagcgggagaagctcaccgcc
ctgcttgagcagctcccccgcgcccagcgcaagcagctggggccgttgccggatctggtc
gaccgtctcgagaaggaactggtgcccttccgcgggccgatgattccagcgctcgcgcgt
gcggtgtcccgcctgtgcggcatggaagtgaccgaggagtccttccgggcggatgccgtg
gtgccgtacctgcgcatcacgctccgggtgctcgacgcgcagggcaaggaactcgcgcgg
ggccgcgacgtcgacgcgctgctcaagcagcacggaggccatgcacgggcggcgctgcgc
agcgcggcgccggcgtcggactgggagcgcaaggggctgaccgcctggactttcggcgac
ctgcccgccgtggtcacccggcgggtcggcaacctcgaggtccgcagctatcccgcgctc
gtcgaccggggcgccaccgtggacctggtgttgctcgagacatccgccgccgctgacgcg
gccacgcgcacgggggtccgccggctcctgatgctcgccgcgcgcgggcacgtggccgtc
agcgccgcgcgcatgccaacgcccttcccgtccctggacggcgcgccgcccgcacggggc
caggccgacgccttccgggcgctcgtcctcgcacgtggcgttgacgacgcgttcaagctc
acaccgggcgcgccgctgccccgcacgaaggcagccttcgagacgctggtccgtgagggc
tcaccgcgcatcgagagtgcggcccgggactgggcgaacgccgtcgttgtcacctccgcg
gagctcgccacgacgctcgcggcactcaaggcggcatcaaggggaccgagcggcgcggcg
gccgtgcgggacatccgctcgcagctcgggcacctgttccccgcgaacctcatcgagtgg
attcccttcgtgcgcctgctgcactacccgcgctacctccgcgcggcccaggcacggctg
tcgcgtgcggtggcgaaccccagcaaggacgcagggaaggccgcgcccttcactcccctg
tgggagaccttcctcgccaggcgcgctaccgtgcgtgaccaggaggcggcgcaggagctg
cggtgggccttcgaggagctccgcgtggccatcttcgctccggaggtgacgacgcccgtg
tccgtgacggtggcgaaggtcggagcggccctcgcggcgctgcgctag
DBGET
integrated database retrieval system
