Myxococcus sp. MxC21-1: QEG98_21875
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Entry
QEG98_21875 CDS
T09754
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
myx
Myxococcus sp. MxC21-1
Pathway
myx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
myx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QEG98_21875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myx03019
]
QEG98_21875
Enzymes [BR:
myx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QEG98_21875
Messenger RNA biogenesis [BR:
myx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QEG98_21875
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Utp25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
WNZ58797
UniProt:
A0AA96XBP1
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All DBs
Position
complement(4839108..4840610)
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AA seq
500 aa
AA seq
DB search
MTFDELQLHDTLLRAVKAEGYTTPTPIQQKAIPHALAGRDVLGVAQTGTGKTAAFALPIL
QRLSAKAPAGGARPVRCLVLTPTRELAGQVGDSFGTYGKGLPLRHAVIFGGVGQNPQVQT
LRSGVDVLVATPGRLLDLMEQGFVSLRSLEVFVLDEADRMLDMGFIHDVRRVIKALPPKR
QTLFFSATLPPDIVDLARSILTDPIRVEVTPASSTAETVSQQVYFVEREQKRGLLTHLLK
EGDIRRALVFTRTKHGANRVAKQLEGAGVSSAAIHGNKSQNARERALDEFRSGTLRVLVA
TDIAARGIDIDGLSYVVNYDLPNVPEQYVHRIGRTGRAGASGTAVSFCDAEERAYLRDIE
RTIRRNVPVVEDHPYRSGQPAPRPVSHASGAAPEARPSGNGGRPQGTPRPAGNGGGGGHS
AGLRAAAGGPWWRWRRRPWAGPSRRWPLGAGLRWQLQPGWPGRFQGFGWRPSRGGAGSGE
GPRGLPASSASPVAQVVLSG
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgacgaacttcagcttcacgacaccctcctgcgcgccgtcaaggcggagggt
tacaccacccccacgcccatccagcagaaggccatcccccacgcgctggcggggcgggat
gtgctcggcgtggcccagacgggcacgggcaagacggcggccttcgcgctgcccatcctc
cagcggctgtccgccaaggcgcccgcgggcggggcgcgcccggtgcgctgcctggtcctg
acgcccacgcgcgagctggcggggcaggtgggcgacagcttcgggacctacggcaagggg
cttcccctgcgtcacgccgtcatcttcggtggcgtgggccagaatccgcaggtccagacg
ctgcgcagtggcgtggatgtgctggtggccacgccgggccgcctgctggacctgatggag
cagggcttcgtgtcgctgcgctcgctcgaggtgttcgtgctcgacgaggcggaccgcatg
ctcgacatgggcttcatccacgacgtgcggcgcgtcatcaaggcgctgccgcccaagcgg
cagacgctgttcttcagcgccacgctgcccccggacatcgtggacctggcgcgcagcatc
ctcacggaccccatccgcgtggaggtgacgccggcgtccagcaccgcggagacggtgagc
cagcaggtgtacttcgtggagcgcgagcagaagcgcgggctgctgacacacctgctgaag
gaaggcgacatccgccgcgcgctcgtcttcacccgcaccaagcacggcgcgaaccgggtg
gcgaagcagctggagggcgcgggcgtcagctcggcggccatccacggcaacaagagccag
aacgcccgtgagcgcgcgctcgacgagttccgctccgggacgctccgcgtgctcgtggcg
acggacatcgccgcgcgcggcatcgacatcgacgggctgagctacgtcgtcaactacgac
ctgcccaacgtgccggagcagtacgtgcaccgcattggccgcaccggccgcgcgggggcc
agtggcaccgctgtgtcgttctgcgacgccgaggagcgcgcgtacctgcgcgacatcgag
cgcaccatccgccgcaacgtgcccgtggtggaggaccatccgtaccgctcgggccagccc
gcgccgcgtcccgtgagtcatgcgtccggcgccgcgccggaggctcgtccttcgggcaac
ggtgggcggcctcagggcacgccgcgtcccgcgggcaacggtgggggcggcgggcactcc
gcggggcttcgcgccgccgccggggggccgtggtggcgctggcggcggaggccgtgggca
gggccgtcccgaaggtggccgctcggcgcagggctccggtggcaactccagccggggtgg
ccagggcggttccaggggttcgggtggcggccgtcccgcggtggcgcaggctccggcgaa
ggcccccgaggcctccccgcttcctccgcgtcgcccgtcgcccaagtggttctgagcggc
tga
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