Myxococcus sp. MxC21-1: QEG98_27055
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Entry
QEG98_27055 CDS
T09754
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
myx
Myxococcus sp. MxC21-1
Brite
KEGG Orthology (KO) [BR:
myx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
myx03016
]
QEG98_27055
Enzymes [BR:
myx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
QEG98_27055
Transfer RNA biogenesis [BR:
myx03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
QEG98_27055
Prokaryotic type
tRNA splicing ligases
QEG98_27055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WNZ59686
LinkDB
All DBs
Position
complement(6082117..6083352)
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AA seq
411 aa
AA seq
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MSRINGNYEVLSDEAGRPIKAWTVGVPFEDEAKKQLRNLRGLPFIHKWVSVMPDVHRGYG
ATVGSVVPTVGAVVPAAVGVDIGCGMIAVRTTLRADQLPDSLRGVRSAIERAVPHGRSDN
GGRNDVGAWRVAPARHQKEWARLVEGYDRIVGKHPRIGRGPELAHLGTLGTGNHFIELCL
DESDGVWLMLHSGSRGVGNRIGSYFIELAKEDMRRWFINLPDGDLAYLAEGTEHFEDYVF
AVSWAQDFAATNRALMLQEAVDALQLSGELPPFELKDAAVNCHHNYIAREHHFGKDCFVT
RKGAVRAREGDLGIIPGSMGARSFIVRGKGNADSFHSCSHGAGRVMSREAAKRRFTVEDH
VKATAGVECRKDVDVIDETPAAYKPIDAVMAAQADLVEVVHTLKQVVCVKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcatcaacgggaactacgaggtgctgtcggacgaggcgggccgccccatcaag
gcgtggacggtaggggttccgttcgaggacgaggcgaagaagcagctccgcaacctgcgt
ggcctccccttcatccacaagtgggtctcggtgatgccggacgtgcaccgcggctacggc
gcgacggtgggaagcgtggtccccacggtaggggcggtggtgccggcggcggtgggcgtg
gacatcggttgcgggatgatcgccgttcgcacgacgctgcgggcggaccagctcccggac
tcgctgcgtggggttcgctcggcgattgagcgcgcggtgccgcatggccgctccgacaac
ggtggccgcaacgacgtgggggcgtggcgtgtggcgcccgcacggcaccagaaggagtgg
gcgcggttggtggaggggtacgaccgcatcgtcgggaagcatccgcgcatcggccgtggg
ccggagctggcgcacctggggacgctgggaacggggaaccacttcatcgagctgtgcctc
gatgagtcggatggcgtgtggctgatgttgcactccggttcgcgcggggtggggaaccgc
atcgggagctacttcatcgagctggcgaaggaggacatgcgccgttggttcatcaacctt
ccggacggggacctggcgtacctggcggaagggacggagcacttcgaggactacgtcttc
gcggtgagctgggcgcaggacttcgccgcgacgaaccgcgcgctgatgctgcaagaggcg
gtggacgcgctgcagttgagcggtgagctgcctccgttcgagctgaaggacgcggcggtg
aactgccaccacaactacatcgcccgtgagcatcacttcgggaaggactgcttcgtgacg
cgcaagggggcggtgcgggcgcgcgagggtgacctcggcatcatccccggaagcatgggg
gcgcgttcgttcatcgtccgcgggaaggggaacgcggacagcttccactcctgcagccac
ggcgcgggccgggtgatgtcgcgtgaggcggcgaagcggcgcttcacggtggaggaccac
gtgaaggcgaccgctggcgtggagtgccgcaaggacgtggacgtcatcgacgagacgccg
gctgcgtacaagcccatcgacgcggtgatggcggcgcaggcggacctggtggaagtggtc
cacaccctgaagcaggtcgtgtgcgtgaagggctag
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