Myroides sp. ZB35: BK054_01510
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Entry
BK054_01510 CDS
T04543
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
myz
Myroides sp. ZB35
Pathway
myz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
myz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BK054_01510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myz03019
]
BK054_01510
03400 DNA repair and recombination proteins [BR:
myz03400
]
BK054_01510
Enzymes [BR:
myz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BK054_01510
Messenger RNA biogenesis [BR:
myz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BK054_01510
DNA repair and recombination proteins [BR:
myz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BK054_01510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Peptidase_C36
Motif
Other DBs
NCBI-ProteinID:
APA90929
UniProt:
A0AAC9IJN6
LinkDB
All DBs
Position
complement(342909..345104)
Genome browser
AA seq
731 aa
AA seq
DB search
MKSTEIDLHKELKRFFGFSQFKGLQEDVVKSIISGHNTFVIMPTGGGKSLCYQLPALVLE
GTAIVVSPLIALMKNQVDAIRSLSSEHGVAHVLNSSLTKTEIAQVKEDIKSGITKLLYVA
PESLTKEEYVSFLQGEKLSFVAIDEAHCISEWGHDFRPEYRNLRNIIRSLGDIPIIGLTA
TATPKVQEDILKNLEIPNANTFKASFNRPNLFYEIRPKTKNVETDIIRFIKQHQGKSGVI
YCLSRKKVEEIANVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGID
KPDVRYVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFMAGKPVAEQE
IGYALLQEVVAYAETSMSRRKFILHYFGEEFDEVNGEGADMDDNIRNPKTKVEAKDSVVQ
LLKVIRDTKQSYKTKEIVFTLLGKINALLKVNKTDTLDFFGCGKDHDEKYWIALIRQVLV
ADLLRKDIEAYGVLKLTEAGLQFIDNPKSFMMTEDHEYSDAENDLDVIASKASLVIDEAL
IGILKDLRKKVAKKYGVPPFVVFQDPSLEEMGLKYPVTLEEMSNIIGVSEGKAKKYGKEF
VDVISKYVEDNDIIRPDDLVVKSTGANSALKLYIIQNVDRKLSLSDIASAKGLDMDGLLK
EMEQIVYSGTKLNISYWIDDVLDEDQQEEIYDYFMESETDNIKAAMTEFDGDYDTEELRL
MRIQFISKEAN
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcaactgaaattgacttgcacaaagagttaaagagattttttggattttctcaa
ttcaaaggtcttcaggaagatgtggtcaaaagtattatttctggacacaatacttttgtg
attatgccgactggaggagggaagtctctttgttatcaattacctgcattggtgttagag
ggaactgctattgttgtttcaccgttaattgctttgatgaagaatcaagtagatgctatt
agaagtttatcttcagagcatggtgtggctcatgtgcttaattcatctcttacgaagact
gagatagctcaggtaaaggaagacattaaaagtgggattacaaagttgctatacgtagca
cctgaatctttaactaaggaagagtatgttagctttttacaaggggaaaaattatctttt
gtagctattgacgaggcccattgtatttctgaatggggacatgactttagaccagagtat
agaaatctgcgcaacattattagaagtcttggtgatatacctattataggactgactgca
acagccactcctaaagtacaagaggatatcttaaaaaacttagaaattccaaacgcgaat
accttcaaagcatcgtttaatagacctaacttattctatgagatacgtcctaaaacgaaa
aatgtagagacggatattattcgctttattaaacaacaccaaggaaagtcaggagtgatc
tactgtctaagtagaaagaaagtagaagaaatcgcaaatgtacttcaggtaaatgggatc
agtgctgtgccttatcacgcaggactagatgccaagacccgtgctaaacatcaagatatg
ttcttaatggaggatgtagatgtagtagtagctactatcgcattcggtatggggatagat
aagccagatgtacgctatgtaatacaccatgatattcctaaatcattagaaagttattat
caagagacgggtagagctggacgtgatggaggtgaaggacactgtctagcctattactca
tataaagatatagagaagcttgagaagtttatggctggtaagcctgtcgctgagcaagag
atagggtatgcattattacaagaagtagtagcgtatgctgaaacatcgatgtctagaaga
aaatttatcctgcattatttcggagaagaatttgacgaagtcaatggcgaaggggctgat
atggatgataatatccgtaatcctaagactaaagtagaagctaaagatagtgtagttcaa
ttattgaaagtaattagagacacgaaacaatcttataagacgaaagaaatagtattcact
ctacttgggaaaatcaatgcattgttaaaagtaaataagacagatacattagactttttc
ggttgtggtaaggatcacgatgagaagtactggatagctcttattagacaagtattagta
gcagacttattgcgcaaagatattgaagcttatggagtgttaaaactgacagaagctggg
ctacagtttatagataatcctaagtcatttatgatgactgaagatcacgaatattctgat
gctgaaaatgatttggatgtgatcgctagtaaagctagtctagtgatagacgaggctctg
atcggtatcctaaaagatctgcgtaagaaagtagcgaagaaatatggtgtacctccattc
gtagtattccaagacccttcattagaggagatggggcttaagtatccagttactctagag
gagatgtctaatattataggagtaagtgaaggtaaggctaagaaatatggtaaggagttc
gtagatgtgattagtaagtatgtagaagataatgatatcatcagacctgatgatttagtt
gttaaatctacaggtgctaattccgcattaaaactttatattattcagaatgtagataga
aagttatctttatcggatatagcgagtgctaaaggattagatatggatggtctgctaaaa
gagatggagcagatcgtatattctggtacgaagttgaatatatcatattggatagatgat
gtcttagacgaagatcagcaagaagaaatctatgattactttatggaatcagagacagat
aatattaaggctgcgatgactgagtttgacggagattatgatactgaagagttgcgatta
atgcgtattcagtttattagtaaagaagcgaactag
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