Myroides sp. ZB35: BK054_02125
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Entry
BK054_02125 CDS
T04543
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
myz
Myroides sp. ZB35
Brite
KEGG Orthology (KO) [BR:
myz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
myz03016
]
BK054_02125
Enzymes [BR:
myz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BK054_02125
Transfer RNA biogenesis [BR:
myz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BK054_02125
Prokaryotic type
tRNA splicing ligases
BK054_02125
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
HeH
Motif
Other DBs
NCBI-ProteinID:
APA91052
LinkDB
All DBs
Position
complement(466884..468314)
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AA seq
476 aa
AA seq
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MKDNTPINGNDLIVLGYPQTELLGIALKANKKRTGYTKVEMLAHYKAVLTNAEDYLNDKV
FGKLATAIIEGVGQRVEEEVIPLREEAVGYTVYGADHIEDGAIKQMQTAVKLPVAVAGAL
MPDAHQGYGLPIGGVLATENAVIPYGVGVDIGCRMALSIFDIKGVEFYGMEELLKEQLVK
HTKFGAGHGFQGQYKAQHDILDRGEFNLNPFIKNLQDKAWEQLGSSGGGNHFVEWGLMEF
MERDEVLNIDKGTYLALLTHSGSRGMGATIAGRYTQIAKDICKLPYEAKNLAYLDLNSEA
GQEYWAMMSLAGDYASACHEVIHDKLTKAIGAEVLAKVENHHNFAWKEMYQGREVIVHRK
GATPASKGVMGIIPGSMTAPGFLVRGKGEEEALNSASHGAGRQMSRTQAIKTLKVADIKA
VLSDHGVELIGAGKDEAPMAYKDIHQVMAAQGELVDVVAMFTPKIVRMADDGSKED
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgaaagataatacaccgattaatggaaatgatttaattgttttaggatacccacaaaca
gagttattgggtattgctctaaaagcgaataagaaaagaacaggttatacgaaggtggag
atgttagcacattataaagctgtgcttactaatgcagaagattatttaaacgataaggta
tttgggaagttggctaccgctattatagaaggcgtgggacaacgtgtagaagaagaggtt
attccactgagagaggaggctgtagggtatacagtatacggtgctgatcatatagaagac
ggagcgattaagcagatgcaaactgcggtaaagctacctgtggctgtagcaggtgcgtta
atgcctgatgcacatcaaggatatggattacctatcggaggagtattggctactgagaat
gctgtgataccttatggtgtaggagtagatattgggtgtagaatggcgttatctattttt
gatattaaaggtgtggagttctatggtatggaagagttgctaaaagagcagttagttaag
catactaagtttggagcagggcatggattccaaggacaatataaagcacaacacgatatc
ttagatagaggagagtttaatctcaatccttttattaagaacttacaagataaagcttgg
gaacaattgggttcttcaggtggaggtaatcactttgtagaatggggattgatggagttc
atggagagagatgaggtgttgaatatagataaaggtacttacttagctttattaacacac
tctggttcgcgaggaatgggggcgactatagcgggtagatatactcagattgctaaggat
atctgtaagttaccttatgaggcgaagaacttggcttaccttgatctaaattcggaagca
ggacaagagtattgggcaatgatgagcttagcaggtgattatgcttctgcttgtcatgag
gttattcatgataaattaactaaggctataggtgctgaggtattagccaaggtagaaaat
caccataactttgcgtggaaggagatgtaccaaggtagagaggttattgtacaccgtaaa
ggagctactccagcgagtaaaggagtgatgggtattatacctggctctatgactgcaccg
ggattcttagtgagaggtaaaggagaagaggaagctttaaactctgcttcacatggagca
ggaagacaaatgagcagaacacaagctatcaagaccctaaaagtagctgatataaaagcg
gtgttgtcagatcatggtgttgagttaataggagcaggtaaagatgaagctcctatggct
tataaagatattcatcaggtgatggctgcacagggagagttagtagatgtagttgcgatg
tttacgcctaagattgtccgaatggctgatgatggaagtaaagaggattaa
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