Myroides sp. ZB35: BK054_05235
Help
Entry
BK054_05235 CDS
T04543
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
myz
Myroides sp. ZB35
Pathway
myz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
myz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BK054_05235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myz03019
]
BK054_05235
03016 Transfer RNA biogenesis [BR:
myz03016
]
BK054_05235
Enzymes [BR:
myz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BK054_05235
Messenger RNA biogenesis [BR:
myz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BK054_05235
Transfer RNA biogenesis [BR:
myz03016
]
Prokaryotic type
tRNA degradation factors
BK054_05235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
OB_RNR_1st
S1
OB_HELZ2
HTH_25
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
APA91625
LinkDB
All DBs
Position
1152330..1154507
Genome browser
AA seq
725 aa
AA seq
DB search
MAKKIKHKKSKAFDFAPKILKFLSKNTTKTYNYKQIAAQLEINDTQGRNEIIKELKHLIS
KGKIEEIETGKYKFIPKANYVEGYIDMTSRKTAYLVVEGVEDDVFIPTNNLNKALDGDFV
KAYIYNKRKGKKPEGEVVEILERHKKQFVGVIEIQKNFAFVSTADAKMYTDIFVPKEKVG
EARDGDVVVVEIEDWPEKADSPFGKVMKVLGKQGEHNTEIHAILAEYGLTAEFPKEVDEY
ANHLDTSITEEEIAKRRDMRDILTFTIDPKDAKDFDDALSFRQLENGFYEIGIHIADVSH
YVKEGTILDEEAYNRATSVYLVDRTVPMLPEVLSNFACSLRPNEDKYTFSAVFELDDKAE
IRNKWFGRTVTHSDQRMAYEEAQYIIDSKDRVIPADISLTGEDQEVSEEVADAVLKLNEL
AMIMRKNRMSDGAISFDKVEVKFNLNEEAEPVGVFFKQSKEANHLIEEFMLLANRKVSEF
IGKQKKTFVYRIHDEPDQEKLFGLQTVIARFGHNINFKSKSSISKSINKLLKDVEGKKEQ
NLVDTLAIRCMSKASYSTNNIGHYGLAFDYYSHFTSPIRRYPDVMAHRLLQHYLDHGDNV
NPELYEIKCSHCSSRENLAANAERDSIKYMQVKYMQDQQGTEFLGVISGVTEWGIYVEIV
DNKCEGMVRIREIKEDYYVFEEKQYALVGQATKKMLQLGDEVIVTVKNADLVKKQLDFNY
IKKVN
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaaaattaaacataaaaagagtaaagcatttgactttgctccaaaaatatta
aaattcttatctaagaatacgactaaaacgtataactataaacagatcgctgcccaatta
gaaataaacgatactcaaggtagaaatgagattatcaaagagcttaaacaccttatctca
aaaggaaaaatagaagagatcgaaactggtaaatacaaattcattcctaaagcaaactat
gtagaaggttatatcgatatgacttctcgtaagactgcttatctagtagtagaaggagta
gaggatgatgtgtttattccaacaaataacctaaacaaggctttagatggtgacttcgtt
aaagcatatatctacaacaaacgaaaaggtaaaaaacctgaaggagaagtagtagaaatc
ttagaaagacacaaaaaacaatttgtgggagttatcgagattcaaaaaaactttgctttc
gtatctactgcagatgctaagatgtacacagatatattcgttcctaaagaaaaagtagga
gaggcacgcgatggagatgtagtcgtagtagaaatagaagattggccagagaaagcagat
agcccattcggtaaagtgatgaaagtacttggtaaacaaggagagcacaatactgaaata
cacgctattttagctgaatatggattaacagcagaattccctaaagaagtagatgaatat
gctaatcacttagatacttctatcactgaagaggaaatagcgaagcgtagagatatgcgt
gatattcttacgttcacgattgaccctaaagatgcaaaagacttcgatgatgccttatca
ttccgtcagttagaaaatggattctacgaaataggtattcacatcgctgacgtatctcac
tatgtaaaagaaggaactatcctagatgaagaggcttataacagagctacttctgtatat
ctagtggatagaactgtacctatgctacctgaggtgttatctaactttgcttgttcgtta
agacctaatgaagataaatatactttctctgctgtatttgaattagacgataaagcagaa
atcagaaacaaatggtttggtcgtactgtaacgcattctgaccaacgtatggcttacgaa
gaagctcagtatatcattgactctaaagacagagttattcctgctgatatctcgcttaca
ggagaagatcaagaagtaagtgaagaagtagctgatgcagtattaaagctaaatgaatta
gcaatgatcatgcgtaaaaaccgtatgtcagatggtgctatttcttttgataaagtagaa
gttaagtttaacctaaacgaagaagctgagccagtaggtgtattctttaaacaatcaaaa
gaagctaatcatttgattgaggaattcatgttattagcgaatagaaaagtatctgagttt
attggtaaacaaaagaaaacattcgtataccgtatacacgacgaaccagatcaagagaag
ttatttggtcttcagactgtgattgcacgctttggacataatattaacttcaagtctaag
tctagtatctctaaatctatcaataaacttctaaaagatgtagaaggtaaaaaagaacaa
aacttagtagatactctagcgattagatgtatgagtaaagcgagttattctacaaataat
atcggacactatggattagcgtttgattactattctcactttacatcacctattcgtcgt
tatcctgacgtaatggctcatagattattacaacactatttagaccatggtgataacgta
aatccggagttatatgaaataaaatgttctcactgttcttctagagagaacctagcggcc
aatgcagaaagagatagtatcaaatacatgcaagtgaaatatatgcaagatcagcaaggt
acagagttcttgggtgttatctcaggtgttacagaatggggtatctatgtagagatagta
gataacaagtgtgaaggtatggtgcgtattagagaaataaaagaagactattacgtattc
gaagagaaacaatatgcattagtaggacaagcaacgaaaaagatgcttcagctaggtgat
gaggttatcgttactgttaagaatgcagatcttgtaaaaaaacaattagatttcaactat
attaaaaaggtaaactaa
DBGET
integrated database retrieval system
