Myroides sp. ZB35: BK054_06655
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Entry
BK054_06655 CDS
T04543
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
myz
Myroides sp. ZB35
Pathway
myz03410
Base excision repair
myz03430
Mismatch repair
myz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
myz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BK054_06655
03430 Mismatch repair
BK054_06655
03440 Homologous recombination
BK054_06655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
myz03400
]
BK054_06655
DNA repair and recombination proteins [BR:
myz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BK054_06655
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BK054_06655
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BK054_06655
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
APA91905
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Position
1470892..1472595
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AA seq
567 aa
AA seq
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MRWYLKQDPDEKIVAHLQEVLGVSPIVGRLLAQRGIETFEAAKKFFRPSLEDLHDPFLMA
DMTEAVHRILNAIKNRESILVFGDYDVDGTTSVALMYSYLKSLGAQVDTYIPDRYNEGYG
ISYQGIDYAITQGIHLIIALDCGIKSIEHIQYAKEKGVDFIICDHHLPGEIIPDAVAVLD
PKRVDCLYPYKELCGCGVGFKLIQALNTIQGLPFASIEHYLDLVATAIAADVVPITGENR
VLAYYGLKVINESPRPGIKALMKLYDLAIYTMTDIVFKLAPKINAAGRIEHGNFTVDLLT
EATEEGANMTVEKIVNINEERKSLDQGITEEALKQIIDQKLINSKSTVVYSPSWHKGVIG
IVASRLIDTYYRPTIVFTDSGDYLAASARSVKNFDIYQALEKCSEHLIQFGGHMYAAGLT
IKKENLEAFRQKFEEVVSNTIQETDLIPEIEIDAKIQFSEITDKFLRILKQFEPFGPGNP
SPCFLTKEVFDTGYAKLAGARGEHLKVSFKQRRNPGYKFSAIGFNLGAQYENVKDKQHVD
IIYSIEENNWRNKTTIQLQIKDLQLSW
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgcgctggtatttaaaacaagatccagatgaaaaaatagttgctcatttacaagaagtt
ttaggtgtaagtcctatagtagggaggttattagcacagcgtgggatagagaccttcgaa
gctgctaagaaattctttagaccttctttagaagatttgcacgacccctttctgatggca
gatatgacagaggctgtccatcgcattctaaacgcgattaagaatcgagaatctatcttg
gttttcggtgattacgatgtggatggaactacgtctgtcgccttaatgtattcctattta
aagagcctaggtgctcaggtagatacgtatattccagatcgatataatgaaggatatggt
atatcgtatcaagggatagattatgctataacgcaaggtatccatctaatcatagctcta
gactgtggtataaagtctatagagcacatacagtatgctaaagagaaaggtgttgatttt
ataatatgtgatcatcacttacctggagagattattcctgatgcagtagccgtgttagat
cctaaacgcgtagactgcctatatccctataaggagttatgtggatgtggtgtaggattt
aagttgattcaggcattaaatacgattcagggacttcctttcgcctctatagaacactat
ctagatctagtagctactgctatcgcagcagatgtagtgccgatcacaggagagaataga
gtattggcgtactatggactaaaggtgattaatgaaagcccacgtcctggtataaaagca
ctgatgaagttatatgacttagctatatatacgatgacagatattgtgtttaagttagcc
cctaaaatcaatgcggctggaagaatagaacacggtaactttactgtagatctattgaca
gaagctactgaagaaggagcaaatatgactgtcgagaaaatcgtaaatatcaatgaagag
cgcaagtcgctagatcaaggaatcacggaagaagcgcttaaacagatcatcgatcaaaaa
ttaattaactcaaagagtaccgtagtgtatagcccatcttggcataagggggtgatcggt
atcgtggcttctcgtcttatcgatacgtattatagaccgactattgtatttacagatagt
ggggattacctagctgcatcagcgcgctctgttaagaactttgatatctatcaggctctt
gagaagtgctctgaacatcttattcagttcggggggcatatgtatgctgctgggttgaca
ataaagaaagagaatctagaagcttttagacaaaagtttgaagaagtagtgtctaacacg
attcaggagactgaccttatacctgagatcgaaatagatgctaagattcagttctcagag
attacagataaatttctgcgtattttaaagcagtttgaaccttttggccctggtaatcct
agtccttgtttcttgacgaaagaggtcttcgatacaggatatgcaaaattagcaggagca
agaggagaacatctaaaagtaagctttaagcagagaagaaatcctggatataagtttagt
gcaataggttttaacctaggtgctcagtatgagaatgtgaaggataagcagcacgtagac
atcatttattctatcgaggagaacaactggagaaataaaactactattcaattgcaaata
aaagacctacagttgtcttggtaa
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