Myroides sp. ZB35: BK054_09225
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Entry
BK054_09225 CDS
T04543
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
myz
Myroides sp. ZB35
Brite
KEGG Orthology (KO) [BR:
myz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
myz03016
]
BK054_09225
Enzymes [BR:
myz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BK054_09225
Transfer RNA biogenesis [BR:
myz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BK054_09225
Prokaryotic type
tRNA splicing ligases
BK054_09225
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
APA92392
LinkDB
All DBs
Position
complement(2047570..2048961)
Genome browser
AA seq
463 aa
AA seq
DB search
MGRKLSGRDFIKIGFPQNNTINIALGQVNRYKKKENKNNILEEAKLVLKNPDSYIGDGIW
GKVAESMIKQVEVKKHQLNTNRVPFSIYGEDAIDEQTKYQLFTALKLPVAVQGALMPDAH
YGYGLPIGGVLATDNAVIPYGVGVDIGCRMSMSVFNLPASFLKGKDHMLLNILSEHTKFG
MYDTHKVKADHEVFSREEFKNIPFVKGLLDKAYKQLGTSGSGNHFVEFGIVRLTETKPEW
RLEPGEYIAVLSHSGSRGLGANIAKHYTYLATKQCPLPSNAQHLAWLDLNTHDGQEYWLA
MNLAGDYAKACHDDIHRRIAKALGKQIAFTIENHHNFAWKEVINNKELIVHRKGATPAAE
GQLGIVPGSMTTNGYIVEGLGNAESLNSASHGAGRLHSRAACKQKFTKSEIKKELSSTGV
QLIGGSVDEAPMAYKDINAVMQAQSELVKVLGSFTPKFVRMDK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaggaaactttctgggagagactttattaaaataggctttcctcaaaacaataca
ataaacatcgccttagggcaagtaaatagatataagaaaaaagagaataaaaacaacata
cttgaagaagctaagcttgtcctaaagaaccctgattcttacataggagacggtatctgg
ggcaaagtagcagagagtatgataaagcaagtggaagtcaaaaagcatcaactgaatacc
aatagagtaccattctctatttatggagaagatgccattgacgaacagacgaaataccaa
ctgttcactgctttaaaattacctgtggcagtacagggggcattaatgcctgacgctcat
tacggatatggtttacctatcggaggagtattagctactgataatgccgttattccttat
ggagtaggtgtagatataggatgtcgtatgagtatgtcagtctttaatctacctgccagc
ttcctaaaagggaaagaccatatgttgttaaacatattatcagaacacaccaagttcggt
atgtatgacacacataaagtcaaagctgatcatgaagtattcagcagagaagagtttaaa
aatattccttttgtaaaaggcttattagataaagcgtacaaacaattaggaacatcaggt
agtggtaaccacttcgtagagtttggtatcgttcgattaacggagactaaacctgagtgg
agattagaacctggagaatatatcgcagttctttcacatagtggatcaagaggtcttgga
gctaatatcgctaagcactacacatatttagcaactaaacaatgccctctaccaagcaat
gcacaacatttagcttggttagacctcaacacacatgatgggcaagagtattggttagcc
atgaatcttgcaggagattacgcaaaggcatgtcacgatgatatacaccgtcgcattgct
aaagcattaggtaagcagatagctttcactatcgaaaaccatcataacttcgcttggaaa
gaagtgattaataacaaagaattaattgttcaccgcaaaggagctactcctgctgcagaa
ggacaattaggaatagtcccgggatcgatgactactaatggctatatagtcgaaggtctg
ggaaatgcagagagcttaaattctgcctctcatggagcaggacgcctacactcacgcgcg
gcatgtaaacagaagtttaccaagagtgagattaagaaagagcttagctctacaggtgtt
caacttatcggaggtagcgtagatgaagccccaatggcttataaagacatcaatgcagtg
atgcaagctcaaagcgaattagtaaaagtattgggaagctttacccctaaatttgtaaga
atggataagtaa
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