Myroides sp. ZB35: BK054_12935
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Entry
BK054_12935 CDS
T04543
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
myz
Myroides sp. ZB35
Pathway
myz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
myz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BK054_12935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myz03019
]
BK054_12935
03009 Ribosome biogenesis [BR:
myz03009
]
BK054_12935
Enzymes [BR:
myz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BK054_12935
Messenger RNA biogenesis [BR:
myz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BK054_12935
Ribosome biogenesis [BR:
myz03009
]
Prokaryotic type
rRNA helicases
BK054_12935
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
MatB
CoA_binding_2
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
APA93108
UniProt:
A0AAC9NGQ3
LinkDB
All DBs
Position
complement(2911087..2912970)
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AA seq
627 aa
AA seq
DB search
MNNFEQLGLNESLLSAIKDMGFENPSEIQQKAIPLLLEKDTDIVALAQTGTGKTAAFGFP
LIQKIDVSNKNTQGLILSPTRELCLQIANEIKQYSKYVKGLHSVAVYGGASITEQAKDVK
RGAQIIVATPGRMQDMINRGMVNIKNINYCILDEADEMLNMGFYEDITSILADTPKEKNT
WLFSATMPQEVARIAREFMKTPEEITVGHKNQGNTNVSHEFYLVSARDRYPALKRLADAN
PDIFSVVFCRTKRDTQSIAEKLIEDGYNAAALHGDLSQAQRDAVMKSFRGKQIQMLVATD
VAARGIDVDDITHVVNYQLPDEIETYTHRSGRTGRAGKSGTSMVIVTKSELRKIQQIERI
IKTKFEEKPVPSGIEICEIQLFHLANRIKEVEVNTEIESYLPAITELLKDFDKEEIIKKV
VSVEFNRFLEYYQKASNSLSSVSAGRNNSKEVPTDGAVRFFVNLGAKDNLDWMTLKDFLR
DTLELGRDDLFKVDVKDGFSFFNTEAEHAEKVMETLNGLEYQGRRVNVEISNNDGGRNGG
RRDHNNRKGGFRGGERRSEGGFRGGERRSSNRSSEGGFRGGERRSDRSSSEGRGERRSDR
SSERAPRNERGSRRSSEGDSSRRTRRN
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatttcgaacaattaggattaaatgaatctcttttatctgcgatcaaggatatg
ggatttgaaaatccatcagagatccagcaaaaggcgattccattactattagagaaagat
accgacattgttgcgttagcccaaacggggactgggaaaaccgcagcttttggttttcct
ttgattcagaagatagacgtttctaataagaatacacaaggtcttatcttatcgccgact
agagagttatgtttgcaaatcgcaaacgaaatcaaacagtactcgaagtatgtaaaagga
cttcattcagtagctgtttatggaggggctagcattacagaacaggctaaagacgtaaaa
cgtggagcacaaattatcgtcgctactcctggtagaatgcaagacatgattaaccgtggt
atggttaacattaaaaacattaattactgtatcctagatgaagcagatgaaatgcttaac
atgggattctatgaggatatcacgtctattttagcggatactccaaaagaaaaaaacaca
tggttattctctgctactatgccgcaagaggttgcgcgcatcgcaagagaattcatgaaa
actccagaagaaattactgtaggtcataaaaaccaaggtaacactaatgtaagtcatgaa
ttttatttagtatctgctagagatcgctacccagcgcttaaacgtttagcagatgccaat
ccagatattttctctgtagtgttctgtagaacgaagagagatacgcaatctattgctgaa
aaacttatcgaggatggatacaacgctgctgcattacacggagacttatctcaagctcaa
cgtgacgcagtaatgaaatcattccgtggtaaacagatacaaatgcttgtagctactgac
gttgctgctcgtggtatcgacgtagatgacattactcacgtagtaaactaccaattacct
gacgaaatcgaaacgtatactcaccgtagtggacgtacaggacgtgctggtaaatctggt
acttctatggttatcgtaacgaaaagtgaattaagaaaaattcaacaaatcgaaagaatc
atcaaaactaaatttgaagagaaaccagttccatctggaattgagatttgtgaaattcaa
ttattccacttagccaatagaattaaagaagtagaagttaacacagagattgaatcttat
ttacctgcaattactgagttattaaaagacttcgacaaagaagaaatcattaaaaaagta
gtttctgttgagtttaatagattcttagaatactaccaaaaagcttctaacagcttatct
agtgtatctgctggaagaaacaattctaaagaagttcctacagatggagcagtacgtttc
ttcgttaacttaggtgctaaagataacctagactggatgacgttaaaagatttcttacgt
gatactttagagttaggtcgtgatgacttattcaaagttgatgtaaaagatggtttctca
ttcttcaatactgaagctgaacacgctgaaaaagtaatggaaacattaaacggtcttgaa
taccaaggacgccgtgtgaatgttgaaatctctaacaatgatggtggtagaaacggtgga
cgccgtgaccataacaaccgtaaaggaggattcagaggtggagaaagaagatctgaaggt
ggatttagaggtggtgaaagaagatcatctaatagatcatctgaaggaggattcagaggc
ggagagagaagatcggatagatcatcatctgaaggacgtggagaaagaagatcagacaga
tcatcagaaagagctcctcgtaacgaacgcggatctagaagaagtagcgaaggagattca
tctagaagaactagaagaaactaa
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