Methylorubrum zatmanii: B2G69_00205
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Entry
B2G69_00205 CDS
T04981
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mza
Methylorubrum zatmanii
Pathway
mza03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mza00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B2G69_00205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mza03019
]
B2G69_00205
03009 Ribosome biogenesis [BR:
mza03009
]
B2G69_00205
Enzymes [BR:
mza01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B2G69_00205
Messenger RNA biogenesis [BR:
mza03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B2G69_00205
Ribosome biogenesis [BR:
mza03009
]
Prokaryotic type
rRNA processing factors
B2G69_00205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ARO52720
LinkDB
All DBs
Position
complement(41691..44837)
Genome browser
AA seq
1048 aa
AA seq
DB search
MANNKMLIDAMHPEETRVVTVQGSRVEEFDFEAANRRPLRGNIYLAKVTRVEPSLQAAFV
EYGGNRHGFLAFNEIHPDYYQIPMADRLALIEAEAREEEEHREREERRPPRGRRSRGRRA
EARGSRPDDTVKSQEAASDAGSEDAAIPGEGQAADAPAPEAIEAVRSALVEGRIEEGNDE
RSESDAASAPVEAGGDASASLPEAALEPGTSASEAPADEAAAVEPSDIAAISEAPNPPVE
AAESFEAAPAEADSAEAETVEPQPVAASAPVSQAEIEEADADSDEDAETDDSDDEDSEND
ESDDEDEDDDEDDDSDDEDDDEESEDGEPRVAQVGGSGDALAELAELPERPRAYRRHYKI
QEVIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGISRKITSAADRK
RLKEVVADLDVPDGMGIILRTAGASRTKPEIKRDFEYLMRLWESVRELTLSSTAPALVYE
EGSLIKRAIRDLYNKDLDEVLVSGEDAYREAKDFMRMLMPGQSKVVKPYRDPTPIFARYG
VEQQLDAMFSTHVALRSGGYLVINPTEALVSIDVNSGRATREHDIEDTALKTNLEAAEEV
ARQVRLRDLAGLVVIDFIDMEEKRNNRAVEKRLNEALKNDRARIQVGRISPFGLLEMSRQ
RIRTGVLESSSIPCAHCGGSGFVRATSSVALHILRSIEEVLLKSASHNVVLRTRTETALY
ILNQKRAHLFDLEQRFSVTITISADDRLVATSAFQLERGEPAVKHEGPVTGVRAVAISPV
YEAEEFEDEAVESQETEEVETEVEAEAEGASEERPAADASEEGGGRRRRRRRRRGGRASG
ESEARARDEDGTDSEDGAEDGAEDGDDAPDSEPEAVEAALGAAAEPDETASDADANGEDA
NGRRRRRGRRGGRGRGRTERNGRSDSEQDSDADEVRATEESEAHPEETASDTLPVGPEEP
FNDADVSTVSLAAENGAAAEPPPVVPAPELEPIQVESFAEAATEAAAPSPANAEPAPEPV
AVVLTPPDPNRPKRAGWWSRTKAALSGE
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaacaagatgctcatcgatgcgatgcatccggaggagacccgggtcgtcaca
gtccaaggctcgcgggtcgaggaatttgatttcgaggcggccaaccgccggcctctgagg
ggcaacatctatctcgccaaggtcacccgcgtggagccctcgctccaggcggccttcgtc
gagtacggcggcaaccgccacggcttcctcgccttcaacgagatccaccccgactactac
cagatcccgatggccgaccgcctcgcgctgatcgaggccgaggcgcgcgaggaagaggag
caccgcgagcgcgaggagcgccgtccgccgcggggccgccgctcgcgcgggcgccgggcc
gaggcccgcggttcgcgccccgacgacacggtgaagtcgcaagaggcagcgtccgacgca
ggctccgaggacgctgcgatccccggtgagggccaggccgccgacgcgcccgcgccggag
gcgatcgaggcggtgcggtccgctctcgtcgaaggacggatcgaagaagggaacgacgag
cggagcgagagcgacgcggcgtccgcaccggtcgaggccggcggcgatgcctccgcgagc
ctgcccgaagcggcgctggagcccggcacctccgccagtgaggcgccggctgacgaagcc
gccgcggtcgagccctccgacatcgccgcgatctccgaggcgccgaacccgcccgtcgag
gccgcggaatcgttcgaggctgctcccgccgaggccgattccgccgaggcagagacggtc
gagccgcagcccgtcgccgccagcgcgcccgtctcccaggccgagatcgaggaggccgac
gcggattccgacgaggacgccgagaccgacgattcggacgacgaagactcggagaatgac
gagtccgacgacgaggatgaggacgacgacgaggacgacgattcggacgacgaggacgac
gacgaggaatccgaggacggcgagccgcgcgtcgcgcaggtcggcggctcgggcgatgcg
ctcgccgagctcgccgagctccccgagcgtccgcgcgcctatcgccgccactacaagatc
caagaggtgatcaagcgccgccagatcatcctcgtccaggtcgtcaaggaagagcgcggc
accaagggcgcggcgctcaccacctacctgtcgctcgccggccgctactcggtgctgatg
cccaacaccggacggggcggcggcatctcgcgcaagatcacctcggccgccgaccgcaag
cgcctcaaggaagtggtcgccgacctcgacgtgccggacgggatggggatcatcctgcgc
acggccggcgcctcgcgcaccaagcccgagatcaagcgcgacttcgagtacctgatgcgc
ctgtgggagagcgtgcgcgagctgacgctgtcctcgaccgccccggcgctcgtctacgag
gagggctcgctgatcaagcgggcgatccgcgacctctacaacaaggatctcgacgaggtt
ctggtctccggcgaggacgcctaccgcgaggccaaggacttcatgcggatgctgatgccc
ggccagtccaaggtcgtgaagccctaccgcgatccgacgccgatcttcgcccgctacggc
gtcgagcaacagctcgacgcgatgttctcgactcacgtcgcgctgcgctccggcggctac
ctcgtcatcaacccgaccgaggcgctggtctcgatcgacgtgaactcgggccgcgccacc
cgcgagcacgacatcgaggacacggcgctcaagacgaaccttgaggcggccgaagaggtc
gcccggcaggtgcgcctgcgcgatctcgccggcctcgtcgtgatcgacttcatcgacatg
gaggagaagcgcaacaaccgggcggtcgagaagcgcctgaacgaggcgctcaagaacgac
cgggcgcgcatccaggttgggcggatctcgcccttcggcctgcttgagatgagccgccag
cgcatccgcaccggcgtgctcgaatcctcctcgatcccctgcgcccattgcggcggctcg
ggcttcgtgcgggcgacctcctcggtggcgctgcacatcctgcgctcgatcgaggaggtg
ctgctcaagtcggcgagccacaacgtcgtgctgcgcacgcgcaccgagacggcgctctac
atcctcaaccagaagcgggcgcatctcttcgatctcgagcagcgcttctcggtcacgatc
accatttccgccgacgaccggcttgtggcgacctccgccttccagctcgaacgcggtgag
ccggcggtgaagcacgagggcccggtgacgggcgtgcgcgccgtggcgatctcgccggtc
tacgaggccgaggagttcgaggacgaggcggtcgagagccaggagaccgaagaggtcgag
accgaagtcgaagcggaggccgagggcgcgtccgaggagcgccccgccgccgacgcgtcc
gaggagggcggtggccgtcgccgccgtcgccgtcgccgtcgcggtggccgcgcctccggc
gagagcgaggcccgcgcgcgggacgaggacgggaccgacagcgaggacggggccgaggac
ggcgcggaggacggcgacgatgcgcccgattccgagccggaggccgtcgaggcggctctc
ggcgccgcggccgagccggacgagaccgcatcggacgccgacgccaacggcgaggacgcc
aacggacgccgccgtcgccgcggacgccggggcggtcgcggccgcggccggaccgagcgc
aatggccgttcggattccgagcaggattctgatgccgacgaggtgcgggccacggaggag
tccgaggcgcatcccgaggagaccgcctccgataccctgccggtgggccccgaggagccg
ttcaacgatgccgatgtgagcaccgtctcgctcgccgccgagaacggcgccgcggccgag
ccgccgccggtcgtccccgcgccggagctcgagccgatccaggtcgagtccttcgccgag
gccgcgaccgaagcggcagcgcccagcccggccaacgccgagcccgcgccggagcccgtc
gcggtggtgctgaccccgccggacccgaaccgtcccaagcgggccggctggtggtcgcgc
accaaggcggcgctgtcgggggagtga
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