Methylorubrum zatmanii: B2G69_19515
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Entry
B2G69_19515 CDS
T04981
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mza
Methylorubrum zatmanii
Pathway
mza03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mza00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B2G69_19515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mza03019
]
B2G69_19515
03016 Transfer RNA biogenesis [BR:
mza03016
]
B2G69_19515
Enzymes [BR:
mza01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
B2G69_19515
Messenger RNA biogenesis [BR:
mza03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B2G69_19515
Transfer RNA biogenesis [BR:
mza03016
]
Prokaryotic type
tRNA degradation factors
B2G69_19515
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
FaeA
Motif
Other DBs
NCBI-ProteinID:
ARO56107
LinkDB
All DBs
Position
4192126..4194492
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AA seq
788 aa
AA seq
DB search
MARRINPTAGTPVLPSREQILAFVAETPGKVGKREIAKAFGISGADKIGLKAILKEIEAE
GALERDRGGLRKGGSLPPVVLADIVSRDRDGDLIARPSQWDGEGEAPKIAVETPRAGRKG
NRPAPGIGDRALVRVAPDPEAPGRYTGRVIKVIGKNRSEVIGVYRASRDGGRLLPVEKKS
QGKEIAIPPGEEGEARDGDLVSVAVERETRFGLPRGRVTERLGALGSEKAVSLIALHIHN
IPHVFPAAVLAEADAAKRATKRGREDWREAPLVTIDPPDAKDHDDAVMAEADPDPANAGG
FIVTVAIADVAAYIRPDSALDREALLRGNSVYFPDRVVPMLPERISNDLCSLREGEDRPA
LAVRMIIGADGVKRSHSFHRILMRSHAKLAYAQAQAAIDGRPDEKSGPVLETALRPLYAA
YEAMKRARDARGPLALDLPERKVLLDAEGGVDRVIVPERLEAHRLIEEFMIQANVAAAET
LEKAGSPLIYRVHDEPALEKMRALGEVLASVGVKMTKAGALRPDLFNRILAQVAESEHAP
FINEVVLRSQAQAIYAAQNLGHFGLNLRRYAHFTSPIRRYADLIVHRALVRACGLGKDGL
PDDTTPGMLDAVSEQISAAERRAMAAERETIDRLIAGYLADRVGATFSGRISGVTRSGLF
VKLAETGADGFVPVSTIGHEYYRHDEALHALVGDRSGETYRLGDTVEVRLVEAAAVAGAL
RFEILSEGRSRSGAKGGGIKRSGSKANPGKAKLGKAKFGAKPPKGKPRPGKAAASESDAA
RRHRGSRR
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
ttggccagacgcatcaatccgacggcgggcacccccgttctcccctcccgcgagcagatc
ctcgccttcgtcgccgagacgcccggaaaggtcggcaagcgcgaaatcgccaaggccttc
ggcatctcgggcgccgacaagatcggcctcaaggcgatcctgaaggagatcgaggccgag
ggcgcgctcgagcgtgaccgcggcggcttgcggaaaggcggcagcctgccgccggtcgtg
ctcgccgacatcgtgtcgcgcgaccgcgacggcgacttgatcgcccgcccgtcgcagtgg
gacggggagggcgaggcgcccaagatcgccgtcgagaccccgcgcgccggccgcaagggc
aaccgccccgcccccggcatcggcgaccgggcgctggtccgcgtcgcgccggacccggaa
gcgcccggccgctacaccggccgcgtcatcaaggtgatcggcaagaaccgctccgaggtg
atcggcgtctatcgcgccagccgcgacggcgggcgcctgcttcccgtcgagaagaaatcg
cagggcaaggaaatcgcgatcccgccgggcgaggagggcgaggcccgggatggcgacctc
gtcagcgtcgcggtggagcgcgagacccgcttcggcctgccccgcgggcgcgtcaccgag
cggctcggcgcgctcggctccgagaaggcggtgagcctgatcgcgctgcacatccacaat
atcccgcacgtcttccccgccgccgtgctcgcggaggcggacgcggccaagcgcgcgacc
aagcgcggccgagaggattggcgcgaggcgccgctggtcaccatcgacccgcccgacgcc
aaggaccacgacgacgcggtgatggccgaggccgatcccgatccggccaatgcgggcggg
ttcatcgttaccgtcgcgatcgcggatgtggccgcctatatccggccggattcggccctc
gaccgcgaggcgctgctacggggcaactcggtctacttccccgaccgggtggtgccgatg
ctgcccgagcgcatctcgaacgatctctgctctctgcgcgaaggggaggaccgtccggcg
cttgccgtgcggatgatcatcggcgccgacggggtgaagcgcagccacagcttccaccgc
atcctgatgcgctcgcacgccaagctcgcctatgcgcaggcgcaggccgcgatcgacggg
aggccggatgagaagtcgggaccggtgctggagacggcgctgcgcccgctctacgcggcc
tacgaggcgatgaagcgggcccgcgacgcccgcggcccgctcgccctcgacctgcccgag
cgcaaggtgctgctcgacgcggaaggcggcgtcgatcgggtgatcgtgccggagcgtctt
gaggcgcaccggctgatcgaggagttcatgatccaggccaacgtcgcggcggccgagacg
ctggagaaggcgggctcgccgctgatctaccgggtccacgacgaaccggccctggagaag
atgcgcgcgctcggcgaggtgctcgcctcggtcggcgtcaagatgaccaaggccggagcg
ctgcggccggacctgttcaaccgcatcctcgcccaggtggccgagagcgagcacgccccg
ttcatcaacgaggtagtgctgcgttcgcaggcacaggcgatctacgctgcacaaaatcta
ggccatttcggcctcaacctgcgccgctacgcccacttcacctcacccatccgccgctac
gcggatctcatcgtccaccgtgctctcgtgcgtgcctgcggattgggcaaggatggcctg
ccggacgacaccacgccgggcatgctcgacgcggtctccgagcagatctcggcggccgag
cgccgggcgatggcggccgagcgcgagaccatcgaccggctcattgccggctacctcgcc
gaccgggtcggcgcgaccttctccggccggatttcaggggtgacgcgctcggggctgttc
gtgaagctcgccgagaccggggccgacgggttcgtgcccgtctccaccatcggccacgaa
tattaccgccacgacgaggctctgcatgccctcgtcggcgaccgcagcggcgagacctac
cgcctcggcgacacggtcgaggtccgcctcgtcgaggcggcggcggtggccggcgccctg
cgcttcgagatcctgtcggaggggcgcagccgctccggcgccaaaggcggcgggatcaag
cgcagcgggtccaaggcgaatccgggcaaggcgaagttgggcaaggccaagttcggggcg
aagccaccgaagggcaagccgcgccccggcaaggcggcggcctccgagagcgatgcggcg
cggcgccatcgcggctcgcgtcgctga
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