Methylorubrum zatmanii: B2G69_20295
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Entry
B2G69_20295 CDS
T04981
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mza
Methylorubrum zatmanii
Pathway
mza03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mza00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B2G69_20295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mza03019
]
B2G69_20295
Enzymes [BR:
mza01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B2G69_20295
Messenger RNA biogenesis [BR:
mza03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B2G69_20295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ARO56244
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All DBs
Position
4416191..4417723
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AA seq
510 aa
AA seq
DB search
MTQFTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPI
LHRLSLDSRRAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQER
AIAPGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAK
RQSLFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHVL
RDPKIERVLVFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVLV
ATDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDI
ERTTRQKIPVGGFPEGFVPPTRQEAQDNAAEEARRPPRQPQGRPGQRQGRPGGGRGQGGE
GRGEPRAHEARGGRPGGQPGHRQDQRAAGAPRPDGQRQDQRRPERAGEARPQGARPQGAR
PSDGRRDGRPARSGGEGGRAIGWLDRAPRT
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
ttgacccaatttaccgatttcggcctcgctcagcccgtgctccgcgcgctggaagaggcc
ggctacgtcacgccgacgccgatccaggcgcaggccgtcccgcccgcgatggaaggccgc
gacctctgcggcatcgctcagaccggcaccggcaagaccgctgccttcgccctgccgatc
ctgcatcgcctgtcgctcgacagccgccgtgcgccgcgccgcggttgccgcgtgctcgtg
ctgtcgccgacccgcgagctcgccagccagatcgccgacagcttctcggattatggccgg
cacctgccctacaccaacaccgtcgtcttcggcggtgtgaacatcacccgccaggagcgg
gcgatcgcgccgggcgtcgacatcctcgtcgccacgccgggccggctcatcgacctcgtc
gatcgccgcgcactgacgctggagggcgtcgagatcctcgtcctcgacgaggccgaccag
atgctcgacctcggcttcatccacgcgctgaagcgcatcgtgaagatgctgccggccaag
cggcagagcctgttcttctcggctaccatgccgaagaacatcgccgggctcgccgaccag
tatctcagcaacccggtgcaggtggcggtcacgcccgtggcgaccaccgccgagcgcgtc
gatcagcaggtcatcttctgccacaccggcgccaagcaggccctgctcaaccacgtcctg
cgtgacccgaagatcgagcgcgtgctcgtcttcacccgcaccaagcacggtgcggaccgg
gtcgtgcgcggcctcgacaaggccagcgtcgtcagcgcggcgatccatggcaacaagagc
cagccgcagcgcgagcgggcgctcgccgccttccgcgacggttcctgccgcgtgctggtg
gcgaccgacatcgccgcccgcggcatcgatgtcgacggcgtgacccacgtcgtgaactac
gatctgccgaacgtgccggaatcctacgtccaccgcatcggccgtacggcgcgtgcgggt
gcggaaggtcaggcgatctcgttctgcaacgacgaggagcgcgcttacctgcgcgacatc
gagcgcaccacgcgccagaagattcccgtcggcgggttccccgagggctttgtgccgccg
acgcgccaggaagcgcaggacaacgccgccgaggaggcgcgccgtccgccgcgtcagccg
cagggtcgccccggccagcgccagggtcgtccgggcggcggtcgcggccagggtggcgag
ggacgcggcgagccgcgcgcccacgaagcccgcggcgggcgtcccggtggacagccgggt
caccgtcaggaccagcgcgccgccggcgcaccgcgccccgacggtcagcggcaggatcag
cgccgtcccgagcgggccggcgaggcccgtccgcagggtgcgcgtccgcaaggagcccgt
ccgagcgacggccgtcgcgacggtcggcccgcgcgctccggtggcgagggtggccgggcg
atcggctggctcgaccgagcaccgcgcacctga
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