Maylandia zebra (zebra mbuna): 101463626
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Entry
101463626 CDS
T02814
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B isoform X3
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03013
Nucleocytoplasmic transport
mze03015
mRNA surveillance pathway
mze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101463626 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
101463626 (ddx39b)
03015 mRNA surveillance pathway
101463626 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mze03019
]
101463626 (ddx39b)
03041 Spliceosome [BR:
mze03041
]
101463626 (ddx39b)
Enzymes [BR:
mze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101463626 (ddx39b)
Messenger RNA biogenesis [BR:
mze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101463626 (ddx39b)
Spliceosome [BR:
mze03041
]
Complex C
Other components
EJC/TREX
101463626 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
101463626 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
101463626
NCBI-ProteinID:
XP_004573690
UniProt:
A0A3P9CNH3
LinkDB
All DBs
Position
LG22:complement(38035070..38056939)
Genome browser
AA seq
437 aa
AA seq
DB search
MTENDVDNELLDYEDDEVEAGGVGDVGDVGGASDMSIRKEGVKGSYVSIHSSGFRDFLLK
PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPITGQ
VSVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLSIKKDEEELKKNSPHIVVGTP
GRILALTRSKTLNLHHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK
EIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDALEFNQVVIF
VKSVQRCVALAQLLVEQNFPAIAIHRGMPQVERLSRYQQFKDFQRRILVATNLFGRGMDI
ERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDARTLNDVQDRFEVNIGE
LPEEIDISSYTKSSFVS
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaaacgacgtagataacgagctgttggactatgaagatgatgaggtggaggcc
ggaggggttggagatgttggagatgttggaggtgcaagtgacatgtcgataaggaaggaa
ggggtgaagggctcctatgtgtccattcactcctctggattcagagactttctactgaaa
cctgaactgctgagagccatagtggattgtgggtttgaacatccgtctgaggttcagcat
gaatgcatccctcaggcaatcctgggtatggatgtgctctgtcaggccaagtctgggatg
gggaagacagcagtgtttgttcttgccaccctgcagcagctagagcccatcaccggtcag
gtctctgtcctggtgatgtgccataccagagagctggcgtttcagatcagcaaggaatat
gagagattttcaaagtacatgcccactgttaaggtggcagtgttctttggagggctgtct
ataaagaaggatgaagaggagctgaagaaaaactctcctcatattgtggtgggaacacca
ggcagaatcctggcactgacgcgcagcaagacgctcaatttgcatcacatcaaacatttc
atcctggatgagtgtgacaagatgctcgagcagcttgacatgcgcagagatgtccaagag
attttccgtatgactccccacgagaagcaggtcatgatgttcagcgccaccctgagtaaa
gagatccgtccagtctgcagaaagttcatgcaagatccgatggaaatctttgtagatgac
gaaaccaagctaactctgcatgggctgcagcagtactacgtcaagctgaaggataatgag
aaaaacagaaagctcttcgatctcctggatgcactagagttcaatcaggtggtgatcttt
gtgaagtccgtccagcgttgtgtagctctggctcagctgcttgtggagcagaactttcca
gcgattgccatccatcgagggatgcctcaggtggaacgtttgtctcgctaccagcagttc
aaggacttccagaggcgaatcctggtggccaccaacctgtttggacgagggatggacatt
gagagagtcaatattgccttcaattatgacatgccagaagactctgacacttaccttcac
agggttgctcgagcaggcaggtttggaacgaaaggcctggccatcacatttgtgtctgat
gaaggtgacgcccgcacgctcaacgatgtccaggaccgcttcgaggtgaacatcggcgag
ctgccggaagagatagacatctcctcgtacaccaagtcttcttttgtttcttga
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