Maylandia zebra (zebra mbuna): 101463749
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Entry
101463749 CDS
T02814
Symbol
col18a1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
mze
Maylandia zebra (zebra mbuna)
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mze04147
]
101463749 (col18a1)
00535 Proteoglycans [BR:
mze00535
]
101463749 (col18a1)
00536 Glycosaminoglycan binding proteins [BR:
mze00536
]
101463749 (col18a1)
Exosome [BR:
mze04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
101463749 (col18a1)
Proteoglycans [BR:
mze00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
101463749 (col18a1)
Glycosaminoglycan binding proteins [BR:
mze00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101463749 (col18a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
DUF1554
Motif
Other DBs
NCBI-GeneID:
101463749
NCBI-ProteinID:
XP_014263139
LinkDB
All DBs
Position
LG16:complement(29993266..30069624)
Genome browser
AA seq
1554 aa
AA seq
DB search
MANQKLVSNQALQSSKAPLASQVLSTTKSPQISKRQPQIDSKSPDTTLRSIDFQPNKSLI
ISQKTGHIPDATQSTISGKKLNQAILFSQTVAVSEPTTIKQPEVGRPALDAESPQCLLLD
TALPFCSSMAGQWFVVPNYFNQSSVEEIQALLNEWAWLLNSQCHHSVEWFFCLLLVPKCG
SLAPLPVLPCQSFCEVLRDSCWTLLDEGRLPVECHTLPDEEEDGYQCLSVSNQKEDSGVS
LLQLIGDPPPSEITQIYGPDNTPSFVFGPDANTGQLARAHLPNPFYREFSLMFNLKPTTN
QGGVIFSITDARQSIMHVGVKLSAVQDNNQNVILYYTKPKSAQSFEAARFLVPSMTNTWT
RFSLAVMDDKVLFYFNCDTDPQVVHIERSAENMELESGAGVFVGQAGGADPDKFLGVIGE
LRVMGDPFAASRHCEEDEDDSDVASGEGSGYVETRPPRPGTEKHTWTTARPTLRPIPRPP
MTRNDETARDSQYVSLSVESSPFLRGPQVEAKGQKGDKGDRGEKGERGPAGPKGEAGSGS
SSRSGSRGDKGESGTKGEKGSAGFGYKGVKGEPGPPGPPGPPGSPGPAPEYTVGSDGSVV
SRVPGPRGPPGAPGPQGTPGADGEPGDPGEDGKTGAQGPPGFPGTPGDPGAKGEKGDRGE
GHAGPRGPPGPPGPPGPGFRSTFEDMEASGFPDLESIRGLPGLPGPPGPPGPPGLPGASA
AFGPPGKDGAPGKPGLPGIPGTDGKPGAPGPNGEKGDAGELGLPGAIGEKGAQGERGLPG
TQGEPGLAGLPGPRGPVGSPGPPGPPGPSYRVGFDDMEGSAGGFNGRPGIGGPDGIQGPP
GLPGLPGNPGLPGRPGEKGDGGPAGRDGQPGLDGFPGPPGSKGDRGDKGQMGEPGRDGTG
LPGPPGPPGPPGQIVYQTSGNFDEVVGRAGPQGGPGLPGRAGFPGPMGPKGDRGDPGPPG
YGEKGEKGEPGLVIGPDGNFLNLAQLAGPKGDRGLPGPVGPPGPYGPPGLKGEIGMPGRP
GRPGINGYKGEKGEPGVGSGFGYPGVPGPPGPPGPPGPPSPASPLDRFNRYDERNYPAIK
GEKGERGETGLPGIPGASPNVDIYTLRNELKGERGESGVKGEKGEPGGGYYDPRFGGVQG
PPGPPGLPGPKGDSIIGPPGPSGPTGPPGIGYDGRPGPPGPPGPPGTLSGSYRPNYPVSV
PGPPGPPGPPGAPGPSSGVTALRSYDTMIATARRQEEGSLIYIIDRADLYLRVRDGVRQV
MLGEYNPFFRDLENEVAEVQPPPVILYPQSQDQSQNNGAGHYSEGFTLIKPIEPPAPTPA
DPRYFPKYDPRFPDQTHTGHTDGRFANQQTESRFPVTPQRQPVPPVLEPAGHFDIQGSGL
HLIALNSPHTGNMRGIRGADFLCFQQARAIGLKGTFRAFLSSKLQDLYTIVRRSDRDSVP
IVNLKNQVLFSSWDSLFGDNASKMRENVPIYSFDGRDILRDSAWPEKMVWHGSSKKGHRQ
TDQYCETWRTGDHAVTGLASSLHSGHLLQQSPSSCSGSYIVLCIENAFTSPSKK
NT seq
4665 nt
NT seq
+upstream
nt +downstream
nt
atggctaaccagaaacttgtatctaaccaagcattacagagtagcaaagctccacttgcc
agccaggtactttctacaactaaatccccccaaatctctaaaagacaaccacaaatagat
agcaagagcccagacacgaccttaagatctatagatttccaacccaataaatcactgata
ataagccagaaaactggtcacatcccagatgctactcagtcaacaataagtgggaaaaaa
ctgaaccaagcaatcttgttcagccagacagttgcagttagtgagccaacaactataaaa
caaccagaagtaggtaggccagcactggatgctgaatccccacaatgcttgttgctagac
accgctcttcctttctgctcctccatggctgggcaatggtttgtcgtgcccaattacttc
aaccagagcagtgtggaggaaatccaagcactcctcaatgagtgggcttggctgttgaat
tctcaatgccatcatagcgtggagtggtttttctgcctccttttggtaccaaagtgtggc
tctttggccccgctgcctgtgttaccttgccagagtttctgcgaagtcttgcgggacagt
tgctggacgctcctggatgagggacgcctccctgtggagtgccacactctacctgatgag
gaggaggatgggtatcagtgcttgtcagttagtaaccagaaagaagacagtggagtctcc
ctgctacaactgattggagatcctcctccaagtgagatcacccaaatctacggaccagac
aacacccctagttttgtctttggaccggatgccaatacgggccagctggcacgcgcccac
ctcccaaacccattttatcgagagttttccctcatgttcaacctgaaacccaccactaac
cagggcggggtcatcttctccatcacggatgctcggcagagtatcatgcatgtgggagtt
aaactgtcagccgtgcaggacaacaaccaaaatgtcattctgtactacaccaagcccaag
tcagctcagtcctttgaggcagccaggttcctcgtgccctctatgacgaacacctggacc
cgtttttctctcgcagtgatggacgacaaggtgctattctacttcaactgtgacacagac
cctcaggtggtgcacatcgagaggtcagcggagaacatggagctggaaagtggtgctggc
gtctttgttgggcaggctggaggagctgatcctgataagttcctgggcgtgatcggtgag
ctgagggtgatgggagatccctttgctgccagcaggcactgtgaggaggatgaagatgac
tcagacgttgcttcaggggaaggaagcggttatgtggaaaccagacccccaagaccaggc
acggaaaaacacacatggacgacggctcgtccaactttgaggcccattccgcgcccaccg
atgaccaggaatgatgagactgcaagggactcccagtacgtttcactttctgtggagtcc
agccccttccttcgcgggccacaagtcgaggctaaaggacaaaagggcgacaaaggggac
agaggagagaagggagagaggggtccagctgggccgaagggagaagcaggctctggctcc
agctcaaggagtggatcccgtggagacaagggagaatctgggacaaagggagaaaagggc
agcgcaggctttggatataaaggtgtaaagggcgagccaggcccacctggacccccgggg
ccccctggttctccaggacctgcacccgagtatacagtcggcagtgacggctcagttgtt
tcgagagttcccgggcccagaggaccacccggagcaccaggaccccagggaactccagga
gctgatggagagccaggtgatcctggtgaggatggaaaaactggtgctcaaggacctcca
ggcttccctggaaccccaggagaccctggagccaaaggagagaagggagaccgtggagaa
ggtcatgcaggcccgagggggcctccaggtcctccaggacccccaggaccaggattcaga
tctacctttgaggatatggaggcctcaggattccctgatctggaatctattcggggtcta
cctgggctaccaggtccaccaggcccccccggaccacctggtcttcccggcgcctctgca
gcatttggaccaccaggaaaagatggagcacctggtaaacctggcttgcctggcatacca
ggtactgatggcaaaccaggagctcctggtcccaatggggagaagggtgatgctggcgag
ctgggtcttccaggagcaattggagaaaagggtgctcaaggagaacgtggtttaccagga
actcaaggagagccaggattagctggtctgcctggacccaggggaccagttggatctcct
ggacctcccgggcctcctggaccaagttatcgagttggatttgatgacatggagggctct
gctggtggtttcaatggacgtcctggcatcggaggaccagatggaatacagggtcctcct
ggattacctggacttccaggtaaccccggcttgcccggcagaccaggtgagaagggtgat
ggaggtcctgctggaagagatgggcaaccaggcctggatggcttccctggacctccggga
tcaaagggtgacagaggagacaaaggacagatgggtgaaccaggtcgagatggaactgga
ctacccggtccaccaggtccacctggaccaccaggacaaatcgtctaccagacatcaggc
aattttgatgaagtcgttggcagagctggccctcagggtgggcctggtttacctggtcga
gctggatttcctggtccaatggggccaaaaggtgaccgaggagatcctggtcctccaggc
tatggtgagaagggtgaaaaaggggagccaggcttggttattggccctgatggaaatttt
ctgaatttggcacagctagctggtccaaagggagacagaggacttccaggacctgttggg
ccccctggaccatatgggcctcctggactgaaaggtgaaattggaatgcctggaagacct
ggtcgtcctgggataaatggatataagggtgagaaaggagagccaggggttggatctggc
tttggctaccctggagtgcctggccctccaggaccacctgggccaccaggaccccctagc
ccagccagtcctttagaccgtttcaatcgctatgatgaaaggaattatccagcaattaaa
ggagaaaaaggggagcgtggtgagactggacttccagggatcccaggagcatcccctaat
gttgatatctacacattgaggaatgaactgaagggagagcgtggagaatcaggtgtcaag
ggagaaaaaggagagcccggtggtggatattatgaccctcgatttggaggagtccaagga
cctccaggaccacctggcctcccaggtccaaagggagattctataattgggccacctgga
ccatctggaccaacagggccaccaggaattggttatgatggtcgtccaggtcctccagga
ccacctggacccccggggaccctttcaggatcatatcgtcccaattatcctgtcagtgtc
cctggtcctcctggcccacctgggccacctggagctcctggaccatcctctggagtgaca
gctttgagatcatatgacacaatgattgctacggccagacgtcaggaagagggcagcctc
atctacatcatagacagagcagacctttatttgagagtacgcgatggagtgcggcaagtc
atgcttggagagtacaatcctttcttcagagatctggagaatgaggtggcagaagtccaa
cctccacctgtgattctgtacccgcagtcgcaggaccagtcccaaaacaacggagcaggc
cattactctgagggtttcactttgataaaacccattgaacctccagcacccacacccgca
gacccccgttactttccaaagtatgatcccagattcccagaccagacacacacaggccat
accgatggaagatttgccaaccagcagacggaaagcagattccctgtcactcctcaaaga
caacccgtccctcctgtgctggagcctgctggccatttcgacatacagggatcaggactg
catctcatcgccttgaacagccctcacaccggtaacatgcgagggattcgtggggcagac
ttcctgtgcttccagcaggctcgtgctatcggcctgaagggaacatttagagccttcctg
tcctctaagcttcaagacctctacaccatcgtccgcaggtcggacagggacagcgtcccc
atagtaaacctcaagaaccaagtgttgtttagcagttgggactctctctttggtgacaat
gccagcaaaatgagggaaaacgtaccaatctactcctttgatggtagagacatcctcagg
gatagcgcttggcctgaaaaaatggtctggcacggatcaagcaagaaaggccaccggcaa
acagaccagtactgcgaaacgtggcgaactggcgaccacgctgtgactggtctggcatca
tcactacatagcggccacctcttgcagcaaagccctagcagctgctccggctcctacatc
gtcctttgcattgagaacgccttcacatcaccctccaaaaaataa
DBGET
integrated database retrieval system
