Maylandia zebra (zebra mbuna): 101464671
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Entry
101464671 CDS
T02814
Symbol
nxf1
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03008
Ribosome biogenesis in eukaryotes
mze03013
Nucleocytoplasmic transport
mze03015
mRNA surveillance pathway
mze05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101464671 (nxf1)
03015 mRNA surveillance pathway
101464671 (nxf1)
03008 Ribosome biogenesis in eukaryotes
101464671 (nxf1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
101464671 (nxf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mze03019
]
101464671 (nxf1)
03009 Ribosome biogenesis [BR:
mze03009
]
101464671 (nxf1)
Messenger RNA biogenesis [BR:
mze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
101464671 (nxf1)
mRNA cycle factors
Stress granule specific factors
101464671 (nxf1)
Ribosome biogenesis [BR:
mze03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
101464671 (nxf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
LRR_8
LRR_9
UBA_8
Motif
Other DBs
NCBI-GeneID:
101464671
NCBI-ProteinID:
XP_004545636
LinkDB
All DBs
Position
LG2:27780788..27793588
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AA seq
659 aa
AA seq
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MFQRNYRNLAVVTHVVNDDLGDFMVRREVRRTDFMVHGEHDDRTAPQFRNRKGRGPHKGR
YDRSRRDRQRGNHSGGFGGPGPRSRLEDTDGDVTMSDGCQDSSSQNRFNPYGRPFRKLDG
RFDRDRRQGKGGGRGGGGGPFRGGERGGGGGKNQSGWYKVTIPHGRKYDKKWLLPALQNI
CSVPYHPIQYHVDHNRVHFYVDDSSVASALHKCSHKITDTDGYKVEVHVNKSAPPSFLLS
DLKPEHLEHLKQCMAKRFDASQQALDLNNIRTDPDLVSQNIEVILNRKTNMEAVIKIIEE
NIPELTSLNLSNNRIHKLDELAELVTKVPNLKTLNLSQNELKSDRELDKVKGLKLVELWL
TRNPLCDVFKDQASYISAVRQRFPRLLRLDGHDLPPPIGFDVETPTTIPPCKGSCFGSDE
IKAHILRFLQQYYSIYDSGDRQPLLDAYHDGASLSITTPYSTQNPSRSSLGEYYKDSRNL
KRVKDSTIRFRLLKHTRLNVVAFLNELPKTQHDIASFTIDVNTYTNTLLSFTVSGVFKEV
VVDGKSRESTMAFSRVFITVPAGNSGLCIVNDQLFIRMATTEEIRRAFVAPAPTPSSSPV
PTLTAQQQEMLTAFSQKSGMNLEWSQKCLQDNEWDFSRAAQIFTQLKAEGKIPDVAFIK
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgtttcagaggaactaccgcaacctggccgtggtgacacatgtggtgaatgatgatctt
ggagactttatggtgaggagagaggtcagaagaaccgatttcatggttcacggagagcat
gatgacagaaccgcaccacagtttcgcaaccgtaaaggcagaggccctcacaagggtcgg
tatgacaggtctcgcagagaccgccagcgtggaaaccactcaggagggtttggaggtcct
ggaccacggtcgaggcttgaagatactgatggagatgtaactatgagtgatggctgtcag
gacagcagctcccagaacagatttaacccatacggaagaccttttaggaaattagatgga
cggtttgacagagacaggcgacaaggcaaaggtggaggcagaggtggagggggtggtccc
ttcagaggaggagaacgaggtggcggaggagggaaaaaccaatcgggctggtacaaagta
acgattccacatggaagaaaatatgacaagaagtggctactcccagctctccagaacatt
tgttccgttccgtaccaccctatacagtaccacgtggaccataacagggtccatttctat
gtggatgactcctctgttgccagtgctttacacaagtgttcacataagatcacagacacc
gatggttataaggtcgaagtgcacgtcaacaaaagtgctccaccgtcattcctcctctct
gacctgaagcctgaacacctggagcacctgaagcaatgcatggcaaaacgtttcgatgcc
tcccagcaagcactcgacttgaacaacattcgaacagacccagacctggtgtcccaaaac
attgaagtgatcctgaacaggaagactaacatggaagctgtcatcaagatcattgaagaa
aacattcctgagctgacgtccttaaacctgagtaacaaccgtattcacaaactggatgaa
ctggctgaattggttaccaaggtgcccaatttgaaaactctcaatctttcccaaaatgag
ctaaagtctgatcgggagctggacaaggtgaaaggcctgaagctggtggagctgtggcta
actcgaaaccctctgtgtgacgtcttcaaggaccaggcctcatacattagtgctgtgcgc
cagaggtttccccggcttctcagactggatggtcatgacctccctccaccgattggattt
gatgtggaaacgcccaccactattcccccctgcaagggcagctgttttggctccgatgag
atcaaggcgcacatccttcggttcttgcaacagtactacagtatctatgattcgggggat
agacagccgctcctggatgcctatcatgatggagcatcattatcaatcacaacaccttac
tccacccagaacccctccaggagcagtctgggagagtattacaaagacagtcgaaacctg
aagagagtcaaagactccacgatacgctttcgactgctgaagcatacacgactgaacgtg
gtggctttcctcaacgagctaccaaagactcagcacgacatcgcctcctttacgattgat
gtgaacacctacacgaatacactactgtcattcacagtgagtggagtctttaaagaagtt
gttgttgatgggaaatcgcgagaatccacaatggccttctctcgagttttcatcacagtc
ccagcaggaaattctgggttgtgcattgtcaacgaccagcttttcattcgaatggccaca
acagaggagatccgccgagccttcgtggctcctgccccgactccatcttccagccctgtc
cccaccctcactgcacagcagcaagagatgctcacagctttctcacagaagtctggcatg
aacctggagtggtcacagaagtgtctacaagacaatgaatgggacttcagcagagcagcg
cagatctttactcagttgaaggctgaaggaaagattcctgacgtagctttcataaaataa
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