Maylandia zebra (zebra mbuna): 101465277
Help
Entry
101465277 CDS
T02814
Symbol
sox5
Name
(RefSeq) transcription factor SOX-5 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
mze
Maylandia zebra (zebra mbuna)
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mze03000
]
101465277 (sox5)
Transcription factors [BR:
mze03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
101465277 (sox5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
101465277
NCBI-ProteinID:
XP_004553958
LinkDB
All DBs
Position
LG17:complement(31819114..32067968)
Genome browser
AA seq
788 aa
AA seq
DB search
MLLLSRETDPYSSMLTEPELPQECNRMSSKRPASPYGGTDGEVTMATSRQRVEDEESEGL
GGVIHLPLASYCNKVSPRSPPNRNLDSPPNMEQDGTKGSSLSPYPQHNATSPGKEEGGGG
GRLCSDGGSAAGTLGTPERRKGSLADVVDTLKQRKMEELIKNEPEEAPSIERLLSKDWKD
KLLAMGSGHVGEIKGTPDSLAEKERQLMGMIGQLSSLREQLLAAHEEQKKLAASQMEKQR
QQMELAKQQQDQIARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAAAA
AQQGFLMPPGFNYKPGCSDPYPLQLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVSP
GAKQHGGSLPPQANLGTHSPPTNTHSQSDKVRSSPPPNKTKDSEGAQPLNLSAKPKASES
KSPNSPPTSPQVPAAAAAANKLDPTSMKHSVAPSSIGGPPTRISSIADLLSSLSSTAYLN
DHEAVTKAFAEARQMKEQLKREQQVLDAKVAAVSNLSLNNGRSDKDKAALESLSQQLKQQ
AENKFSHAMLDFTMSGDSDGSPSVSDSRIFRESRGRSSSEPHIKRPMNAFMVWAKDERRK
ILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTC
LVDGKKLRIGEYKAIMRSRRQEMRQYFSVGQQGQLPLSSAGVVYPGALSMAGMPSPQMPS
EHSSMSSSPEPNANHHQNPSMPGLKGEEPRIKEEELRLDDSNGDVYDDFDYEDEDGDYAS
DNENHITQ
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgttgttgttgtcgagagagacggacccttactccagcatgctcactgagcctgagcta
cctcaggagtgtaacaggatgtcttccaagcgaccagcctctccatatggggggacagat
ggagaggtaaccatggcaaccagcagacagcgagtggaggatgaggagagtgagggactg
ggcggtgtcatccacctccccctggcctcctactgcaacaaggtgtcccctcgctcgccc
cccaaccgcaacttggacagcccgcccaacatggagcaggatggcactaaggggagctcc
ctgagtccttaccctcagcacaatgctacctcaccaggcaaagaagagggtggaggcggg
gggcgcctctgcagcgacgggggctcggccgcgggcaccctgggcacccccgagagacgc
aagggcagcctggcagacgtggtggacacactgaaacaacgcaagatggaggagctgatc
aaaaacgagccagaagaggcccccagcattgagaggctgttgtcaaaggactggaaggat
aaacttttggccatgggctcagggcacgtcggagaaattaaaggtaccccagacagcctg
gcggagaaagagcgccaactcatgggcatgattggccagttgagcagcctgagggagcag
ctcttggcggcccatgaggagcagaagaagctggccgcctcacagatggagaagcagagg
cagcagatggagctcgccaagcagcagcaggatcagattgcccggcaacagcagcagctt
ctacagcagcaacacaaaatcaacctcctgcagcaacaaatccagcaggtccagggccaa
ctccctccactgatgattcctgtctttcccccagaccagcgaactcttgcggcagctgcg
gcccagcagggcttcctaatgccccctggcttcaactacaagcctggctgcagtgacccc
taccctctccagctcatccccacaacgatggctgctgctgctgccgccacaccaggtctg
ggacccctacagctccagcagttgtatgctgctcagctagcagccatgcaggtttcccct
ggggccaagcagcatggaggcagccttcctccccaagccaacctgggcacgcactcgcca
cccaccaacacacattcacagagtgacaaggtccgcagctccccgccaccaaataaaacc
aaggacagtgagggtgcacagccactgaacctgtcggccaagcctaaggcatccgagagc
aagtcacccaactcccccccaacttccccacaggtgccggctgctgctgctgctgcgaac
aagctggaccccacttccatgaagcacagcgttgccccctccagcattggaggaccaccg
accagaatcagctcaattgcagacttgttgtcgtcgctgtcttcgacagcctacctgaac
gaccacgaggcggtgaccaaggccttcgccgaggctcggcagatgaaggagcagctgaag
agagagcagcaggtgctggatgccaaggtggcagccgtcagcaacctcagcctcaacaac
ggccgctcagacaaggacaaagctgccttggagagtctgagtcaacagctgaagcagcag
gccgagaacaagttcagccacgccatgctggacttcaccatgagtggagactctgacggc
tctcccagcgtgtcagactccaggatattccgagagtctcggggtcgtagcagcagcgag
ccgcacatcaaaaggccgatgaacgctttcatggtctgggccaaggacgagaggcgaaag
atcctccaggccttccccgacatgcacaactccaacatcagcaagatccttggctcacgc
tggaaagccatgaccaacctggagaagcagccgtactacgaggagcaggctcggctcagc
aagcagcacctggaaaaataccccgactacaagtacaagccacggcccaaacgcacctgc
ctggtggacggcaagaagctgcgcatcggcgagtacaaggccatcatgaggtcccgcagg
caggaaatgagacagtacttcagtgtggggcagcagggtcagctgccgttgtcctctgca
ggcgtcgtttacccaggtgccctatccatggcggggatgccctcaccccagatgccctca
gagcactcgagcatgtccagcagccccgagcccaacgccaaccaccaccagaaccccagc
atgcctggcctcaagggggaggagccgcgaatcaaggaggaggagctcaggctagacgac
agcaatggcgacgtgtacgacgactttgactacgaggacgaagatggcgactacgccagc
gataacgagaaccatatcacccaatag
DBGET
integrated database retrieval system
