Maylandia zebra (zebra mbuna): 101466251
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Entry
101466251 CDS
T02814
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101466251 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mze03041
]
101466251 (ddx42)
Enzymes [BR:
mze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101466251 (ddx42)
Spliceosome [BR:
mze03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101466251 (ddx42)
Complex B
101466251 (ddx42)
Complex C
U2 SnRNP specific factors
101466251 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
CARF-assoc_HTH
Motif
Other DBs
NCBI-GeneID:
101466251
NCBI-ProteinID:
XP_004552486
UniProt:
A0A3P9D8U9
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All DBs
Position
LG4:24530033..24538176
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AA seq
909 aa
AA seq
DB search
MNWNKGGPGVKRGFGFGGFSLAGKKEEPRLPHQSHTSFGGPGSGSGGYGKNQQLPSFYKI
GTKRANFDEENAYFEDDEEESSSNMDLPYIPAENSPTRQQMQSGGGSDSEDDPLDAFMAE
VENQAAKDMKKLEEKEKEKKSAKGIRDDIEEEDEQEAYFRYMAENPTAGLTQEEEEENID
YDSDGNPIPSTTKKIIMPLPPIDHSEIDYPPFEKNFYEEHEELSSLTGTQVLELRHKLNL
RVSGAAPPKPCTSFAHFNFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGS
GKTAAFIWPMLVHIMDQKELEPGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSVAVY
GGGSMWEQAKALQDGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQV
RSIASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQVVEMLVSG
SDKWGWLTRRLVEFTSTGSVLIFVTKKANCEELATNLTQEGYSLGLLHGDMDQSERNKVI
SDFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTL
LTNKDTSFAGDLVRNLEGANQAVSKELMDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYR
ERPGLGAESSDRSSTSSLLSSTSSYEGYSKPTTGAMGDRMSAMKQAFQAQYKSHFVAASS
GPPKLSAKSSGSSGWTSAGSLSSVPTESANGSERSHSATLSMVGFTSAGSLSSVAPTSQT
SSLQSYTPPAPPSQRESSRDRHGDDRGRHGDSQHRHSDRNDRYSSEDRYGDRDRHGDRDR
DRDRHGDRDRHSSSRHSDSRNGDGSKRDRDDRRSDRDGGDRGSGDGRDRGSDSFAVPEPP
KRRKSRWDN
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaaggtggtcctggtgtgaagcgaggttttggctttggggggttttca
ctcgcaggaaaaaaagaagagcctcgccttcctcatcaatcacacacatcatttggaggc
ccaggatctggaagtggtggatatgggaagaaccagcagctcccatcattctacaaaata
gggaccaaaagagctaattttgatgaggaaaatgcatattttgaagatgatgaagaggag
tccagcagtaacatggatctgccttacatcccagctgaaaactcacccacacggcaacag
atgcagtcaggtggtggctcagacagcgaagatgaccctttggatgctttcatggccgaa
gttgagaaccaagcagctaaagacatgaagaaactagaggaaaaggagaaggagaaaaag
tcagccaagggtattcgtgatgacattgaagaagaagatgagcaagaagcttacttccgc
tacatggcagagaatcccaccgctgggctgacacaggaagaggaggaggaaaacattgat
tatgacagtgatgggaatccaattccctctacaaccaagaaaattatcatgccactccct
cctattgaccactcagagattgattatccaccctttgagaaaaacttttacgaagagcat
gaggaactcagcagcttgactggaactcaggtgctggagttgaggcataaactgaactta
cgagtatctggtgctgcccctccaaaaccttgtaccagctttgcccactttaatttcgat
gagcaactaatgcaccaaattcggaagtctgaatatactcagcccacaccaattcagtgt
cagggtgtccccattgcgctgtcaggacgtgatatgataggtattgcaaaaacgggcagc
ggcaaaactgcagcttttatctggccaatgctggttcatatcatggaccaaaaggaactg
gagcctggggaaggacccatcgcagtcatcgtgtgccctaccagagagctttgtcagcag
atccatgcagaatgtaagcgctttgggaaagcctactcattgcgttcagtggctgtatat
ggaggaggcagcatgtgggagcaagccaaggctttgcaggacggtgcagagattgttgtg
tgcactccaggtcgtctgatagaccacgttaaaaagaaggccacgtctctgcagagagta
acatacctggtgtttgatgaggctgatcgaatgtttgatatgggctttgaatatcaggtt
agatccattgccagccacgttcgcccagacagacagactcttctgtttagtgctacattt
cggaagaagatagagcggcttgctagagacattttggttgatcccattcgtgtcgtgcag
ggagacattggagaggccaatgaggatgtgactcaggtagtggagatgctggtcagtggg
tctgataaatggggctggctgactcgccggctggtcgaattcacctccacaggatcggtc
ctcatttttgtcaccaagaaggccaactgtgaggagctagctactaacctgactcaagag
ggctacagcctgggcctcctgcatggtgatatggaccagagcgagaggaacaaggtcatc
agtgatttcaagaagaagaacttgcccgttctggtggccactgatgtagctgctcgtggt
ctggacatcccatcaattcgtacggtggtgaactacgacgttgcacgagacatcgacaca
cacacccacaggatcggtagaacgggtcgtgctggagagaaaggtgtggcctacactctc
ctcactaataaagacacatcatttgctggggacctggtgcggaatctggagggagctaat
caggctgtttccaaagaactgatggacttggccatgcagaatccctggttcaggaagtca
cgattcaaaggtggcaaaggaaagaaactgaatattggtggaggtggtcttggttacaga
gagagacccggccttggggctgaaagttctgatcgtagcagcactagtagcttgttgtct
tccactagtagctatgaaggctacagcaaaccaactactggggcaatgggagatcgcatg
tctgcaatgaaacaagccttccaggctcaatataagagccactttgtagctgcatccagc
ggccccccaaagctcagtgccaagtctagtggctcctcaggatggaccagtgccggcagc
ctgagctctgtgccaacagaatctgccaatggctcagaacggtctcacagtgctaccttg
tccatggtgggtttcaccagtgctggctccctgagctcagtggcccccaccagtcaaacc
agttcactccagagctacactccacctgcacctccgtcacagagagagagctcacgtgat
agacacggggacgaccgggggcgtcacggtgacagtcaacaccgccatagcgacaggaac
gatcgatacagtagcgaggatcgctacggagaccgggatcgtcacggggatagagataga
gatcgtgaccgccacggcgaccgtgatcgccacagcagcagccgccacagtgacagtcgt
aacggagatggaagcaagagggacagagatgatcggaggagtgatagggatgggggagac
agggggagtggagatgggagggacagaggaagcgatagctttgctgtccctgaaccacct
aaacgtagaaagagcagatgggacaactaa
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