Maylandia zebra (zebra mbuna): 101467053
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Entry
101467053 CDS
T02814
Name
(RefSeq) LOW QUALITY PROTEIN: protein SMG5
KO
K11125
protein SMG5
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101467053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mze03019
]
101467053
03032 DNA replication proteins [BR:
mze03032
]
101467053
Messenger RNA biogenesis [BR:
mze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
101467053
mRNA cycle factors
Common to processing body (P body) and stress granule
101467053
DNA replication proteins [BR:
mze03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
101467053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
101467053
NCBI-ProteinID:
XP_004568626
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All DBs
Position
LG11:complement(28342486..28363467)
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AA seq
1123 aa
AA seq
DB search
MSGPGQDSEPEAKVLLIKRLYRAVVETVHKLDVIIGSKSSYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFYQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSATPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVEAEQLAERFYHQALSVMPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSDA
PFEGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRSKDIKRLLVSFMYLQSLLQPKNS
LMETELTSLCQSVLEDFNLVMFYLPPPTHGGAHHTPSEEEEEQQQHSDSSYPVLPDNLIF
KMVVTCLMVVHSLKRGGSKQYSASIAFTLALFSHLVNHVNIRLQAELEEAESQVPPLQTD
AADDLDMKDLTAAPTDPSGERPLQNGSLEQEDEEDKDEDGSERVAANKHSSIEEQRKMNE
EKQRQKKKYSRLSRLRRRRCARKDGHGEDESDLSEGFESEEEEDDDEERGVRADSTGGTT
TGTPVNSSSVKKEPKRDALGEEGSWGSGSEEEEEGGTAFDVETDSDMNSQESRSDLEDIE
DTENSEGHAREHQDDEDEDQPKEDAGERDTTDTPPTTNGPLMSSDSSISSNLQAMSSQLF
QAKRCFRLAPTFSNMLLRPHASSSPSIPTPTDSSAPPSQETPPPPPPPPGDSPCEMNPGT
ANGTSENDLDSDSEGSQHSTESVHSEKTLLEKLEIMTNQGLIQVVKVFLDWLRTNTDIIL
MCAQSSQSLWNRLSVLLNLLPDGSKLLEAELSLNAEVTELLNECERPDLVQSLLLPEDLA
LRHLPALGVAHRRLDFSRRNPSLSPLQECVVRVCCIRSFGHFLTSLQGNVLHFNPEAGIF
TSVSQSKQDNLVQQAKAQFRMAEEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSSM
SPYLVPDTAALCQHLNLIRQLAGSGCFIIIIPRTVIDGLDRLKKENAGARDGIRFLESEF
RKGNRYIRCQKESGRSFERDKLKRQDIEAWHLYKMVDSCRQLTVSQSXGDEDTAGMVTIL
TGHEVEELCSRSAAMKAAIQAAGSAGMELKNIVEFYRQWKEIG
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgagcggacccggacaggacagtgagccagaggccaaagtccttctcatcaagcgactc
tacagggctgtggtggagactgtgcacaagctagatgtcatcatcggcagcaaatcgtcc
tacagagaagtcttcaagccggagaacatcagccttcgcaacaagctgagggaactttgt
gtgaaactgatgtttctgcatccagtggactatggccgcaaggccgaggagctgctgtgg
agaaaggtttactatgaagtcattcaggttatcaagaccaacaagaagcacatccacagt
cgcagtgctctggagtgtgcctacagaactcacctgatagccggcgtgggtttctaccaa
cacctgctgctctacatccagtcacattaccagctggagctgcaggattgcattgactgg
acccacgtgacagatccactgatagggcgaaagaaaccagtgtcagccacccccaaggag
atggagtgggcacagatggcctgtcatcgctgtctggtctaccttggagatctagcgcgc
taccaaaacgagcttgcaggagtggaggctgagcagctggcggagaggttttaccatcag
gcattgtcagttatgccacacgtaggaatgccttttaaccaactgggcacactggcaggg
agcaagttctacaatgttgaagcaacttactactacctacgctgcattcaatcagatgcc
ccctttgagggcgcctacggcaacctgaagcgcctgtttgacaaagctgccaagatgtat
catcaagtaaagaaacaggaaatgaagaagttgtctccctctcgacaaaggtcgaaagac
attaagcggctcctggtgagcttcatgtatctgcagagcctgctgcagcccaagaacagc
ctgatggaaacggagctgacttcactctgccagtcggtgctggaagacttcaacttggtg
atgttctacctgccaccgccaacacatggcggtgctcaccacacccctagcgaggaagag
gaggagcagcagcagcacagtgacagctcctatcctgtgctgcctgacaacctaatcttc
aaaatggtggtcacatgtctgatggtagtgcacagccttaagagaggaggttcaaagcag
tacagtgcatccatagcattcactctggccctcttctcccaccttgtaaaccacgtcaac
atccggcttcaggctgaactggaagaagcagagagtcaggtgcctccacttcagactgac
gctgcagacgatctggacatgaaggatctgacagctgcaccgacagatccctctggtgaa
aggcctttgcaaaatggttccctggagcaagaggatgaggaggataaggatgaagatggc
tctgaaagggttgcagccaacaagcacagcagcatagaagaacaacgcaagatgaacgaa
gagaagcagaggcagaagaagaagtacagccgcctttctcgactccgccgtcgccgctgt
gctcgcaaagacggtcacggagaggatgaaagtgacttgagcgaaggcttcgagagtgaa
gaagaagaagatgacgatgaagaaagaggggtccgtgctgattcaacaggtgggaccaca
acaggaacgccagtcaactcgtcatctgtgaagaaggagcccaagagagatgccttgggc
gaggagggcagctggggaagcggctctgaggaggaggaggaaggaggaacagcatttgat
gtagaaactgattcagacatgaacagtcaagagtctcgctcagacctagaagacatagag
gacacggaaaactcagagggtcacgcccgggagcaccaggatgatgaagatgaggaccaa
ccaaaggaagacgcaggagagagggataccaccgacacccctccgaccaccaatgggcct
ctcatgtccagtgactccagcattagcagtaacctgcaggccatgtcttctcagctcttc
caggctaagagatgctttcgcctggcgccaacattcagtaacatgcttttaaggcctcat
gcttcgtcttccccgagtattccaacccctactgacagctcagctcccccctcccaagag
actcctcctcctcctcctcctcctcctggagattccccctgtgaaatgaaccctggtact
gccaatggaaccagtgaaaatgacttggactctgattcggaaggaagtcaacacagcact
gagtcagtacatagtgaaaaaaccctcttagagaaactggagattatgaccaatcagggg
ttaatccaggttgttaaggtgtttcttgactggctacggacaaataccgatattatcctc
atgtgtgcgcagagttcccaaagcctgtggaaccgactgtctgtgctgctgaacctgcta
ccagatggcagcaagctgctcgaggctgagctcagtctgaacgctgaagtgacagagttg
ttaaatgagtgtgagcgaccagatttggtccagagtctgctgctgcctgaggatctagct
ctgcgacacctgcctgctcttggtgtagcccaccgccgccttgacttttcccggcgcaac
ccctccctcagtcccctacaagagtgtgtggtacgagtgtgttgtattcgcagcttcggc
cacttcctgacaagtctccaaggcaacgtgctgcactttaacccagaggcgggcatcttc
accagcgttagtcagtccaaacaggataatctggtgcagcaggccaaggcccagtttcgc
atggctgaagaggaggctcgtcgtaatcgattaatgagggacatggcccagcttcgacta
cagttggaggtgtcacagctagagggcagccttcagcagcctaaagcccagtcatccatg
tctccctacctggtgccagacacagctgctctgtgccagcatctgaacctcatccggcag
ctggctggtagcggttgctttatcatcatcatcccacgaacagtgattgatggacttgac
aggttaaagaaggaaaatgctggtgcgagggatggaatccgcttcctggagtctgaattt
cgtaaaggcaacagatacatccgctgccagaaggagtcgggtcgaagttttgaaagagat
aagctgaagcggcaggacatcgaagcctggcatctgtacaagatggtggatagttgccgt
cagctaacagtctcccagagcnacggagatgaagatacagccggtatggtgaccattctt
acaggccatgaagtagaggagctttgctctcggtcagcagcgatgaaggcggcgatccag
gcggctggctcagcaggcatggagctgaagaacatcgtggagttctaccgtcagtggaag
gagattggctga
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integrated database retrieval system
