Maylandia zebra (zebra mbuna): 101468816
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Entry
101468816 CDS
T02814
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03030
DNA replication
mze03420
Nucleotide excision repair
mze03430
Mismatch repair
mze03440
Homologous recombination
mze03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101468816 (rpa1)
03420 Nucleotide excision repair
101468816 (rpa1)
03430 Mismatch repair
101468816 (rpa1)
03440 Homologous recombination
101468816 (rpa1)
03460 Fanconi anemia pathway
101468816 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mze03000
]
101468816 (rpa1)
03032 DNA replication proteins [BR:
mze03032
]
101468816 (rpa1)
03400 DNA repair and recombination proteins [BR:
mze03400
]
101468816 (rpa1)
Transcription factors [BR:
mze03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
101468816 (rpa1)
DNA replication proteins [BR:
mze03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
101468816 (rpa1)
DNA repair and recombination proteins [BR:
mze03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
101468816 (rpa1)
MMR (mismatch excision repair)
101468816 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
101468816 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Pox_vIL-18BP
A_deaminase
Motif
Other DBs
NCBI-GeneID:
101468816
NCBI-ProteinID:
XP_004558223
UniProt:
A0A3P9BJ94
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All DBs
Position
LG14:complement(25437776..25470529)
Genome browser
AA seq
602 aa
AA seq
DB search
MTKLSEGTIEALSNGTSVSDAVLQLVNIRKLDGGNGPSRFRVMMSDGRHTLSSFMLSTQL
NHMAEENILAPNCICNLKRHVTNILKDGRRVVIILEIDVIKPAKDVAGRIGDPTPYTEGQ
SKGPQSAPVPENRPPLQPQNRNEAVNRGLNRDFGKKAPSVMPNTPGGSSKVVPIASLNPY
QSKWTIRARVTNKGSIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNQEVDKFYSLIEAGK
VYYISKGSLKLANKQYTSVKNDYEMTLNGESTIIPCEDSCDVPMVQCDFVSIGDLENRDK
DAIVDVIGVCKSVDDISRLTTKSNREVSKRTLSLMDMSGKVVTVTLWGEEAEKFDGSSQP
VVAIKGAKLSDFGGRSLSASFSSTLMINPDIPEAYKLRGWYDKEGHAMDGQSLTEVKGGS
GGGNTNWKSLSDVKTEHLGHGDKADYYTCVATIVFLRKENCLYQACPSQDCNKKVVDQQN
GMFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKDSNE
AAFDEVFQHANFNTFVFRNRVKLETYNDESRIKATVMDVKPVDHKEYSKRLILNIRKLAA
NH
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaactctcggagggaacaatagaggctctttcaaatggcaccagtgtcagcgac
gcagtgcttcagttggtgaatattcgcaagcttgatggaggaaatggtccttctcgcttt
cgggtgatgatgagtgatggaaggcacactctgtcatcattcatgctctccacccagctg
aaccatatggctgaggaaaacatactggccccaaactgcatctgtaatctgaagagacac
gtgaccaatatactgaaggatggacgacgagtggtaatcattttggaaattgatgtcatt
aagccggcaaaagatgttgccggtagaataggagaccctactccttacactgaggggcaa
agtaaaggcccacagtcagctcctgtccctgaaaaccgacccccgctgcagccacagaac
agaaatgaagcagtgaacagaggtttaaacagagactttgggaagaaagctccatctgtt
atgccaaatactccagggggaagctccaaagttgtgcccattgcaagcctcaacccctac
cagtccaagtggacgatccgcgctcgtgtgaccaacaagggctccattcgtacgtggagc
aactctcggggggatggcaagctattctccatggagattgttgatgagagtggagagata
cgagtgactggtttcaaccaagaagtggacaagttctacagtcttattgaggctggcaag
gtctactacatctccaagggctcccttaagctcgccaacaagcagtacacatcagtaaag
aatgactatgagatgacactcaatggcgagtccaccattatcccctgtgaggacagctgt
gacgttcccatggtgcaatgtgactttgtctctatcggtgacctggagaacagagacaaa
gatgctattgttgatgtaattggagtgtgcaagagtgtggacgacatatcccgcctgaca
accaagtccaaccgtgaagtgtctaagagaacactcagtctgatggatatgtctgggaag
gtggtgactgtcacactgtggggagaggaagcagaaaagtttgacggatctagccaacct
gtcgttgccattaagggggcaaagctttcagactttggaggccggtcactctctgcatcc
ttcagcagtactcttatgatcaacccagacatccctgaggcatataagctcagaggctgg
tatgacaaggaggggcacgctatggatggacagtctctgacagaggtgaaaggtggcagc
gggggaggaaacaccaactggaagtctctatctgacgttaagactgagcatctgggacac
ggagacaaggctgactactacacctgcgtagctacgattgtgtttctgcgcaaggaaaac
tgtctttatcaggcctgcccgagccaagactgcaacaaaaaagtggttgaccagcagaat
ggcatgtttcggtgtgagaagtgtgacaaggaattccccaacttcaagtaccgcctcatc
ctctctgccaacattgcagattatggggacaaccagtgggtgacttgcttccaggagagt
gcagaggctatcctgggccagaatgcagcttacctggggcagctcaaggactcgaatgaa
gctgccttcgatgaggtcttccagcatgccaacttcaacacttttgtcttccgcaacaga
gtgaagctggaaacgtataatgatgaatcgaggattaaagctacagtgatggatgtaaag
cctgttgatcataaagagtatagcaagaggttgatcctgaacataaggaaactggcggct
aaccactag
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