Maylandia zebra (zebra mbuna): 101469545
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Entry
101469545 CDS
T02814
Symbol
skiv2l
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101469545 (skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mze03019
]
101469545 (skiv2l)
Enzymes [BR:
mze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101469545 (skiv2l)
Messenger RNA biogenesis [BR:
mze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101469545 (skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
101469545 (skiv2l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
MTR4-like_stalk
DEXQc_Suv3
ResIII
HTH_23
Ski2_beta-barrel
DUF3516
Motif
Other DBs
NCBI-GeneID:
101469545
NCBI-ProteinID:
XP_004549023
UniProt:
A0A3P9DMD4
LinkDB
All DBs
Position
LG22:10689499..10709312
Genome browser
AA seq
1242 aa
AA seq
DB search
MDRLNVPPPGPMDLPMSLLEMGCSGRFELITHPVPGQSLPPHSTLPHGLPPTNLNLETEV
EKQFLRDPAWLPIHDKDFAFQKFLKVTQRKVDVDSLLNCCPSPLHSGLSVVRDPTTGMLL
DFTEVLLENTGLSAKNSLSLQRQPGPPSESLRGSNTNYPFLPGGMEELTLEQIKKKSELE
EEIDFESDLLKVAPGLKAGMDFTDKDAKIAKPEVNLMSLLSTVEGISGLQLEEKEKDKES
EDAPKLPRTNSLEDLGIKDAASSSSPPEKGKEEKSKLKENTEENKKWAIPVNITSPCDDF
HKRIPNPAFKWPFELDVFQKQAVLRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMTRT
IYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVIRD
LEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKRHIY
VISTLKRPVPLEHYLYTGNSTKTQKEMFLLVDATGNFLNKGYYAAVDAKKERTSKHAQSF
GTKNTSQNTTASQDRSVWLTLLHFLSQRQQTPVVAFTFSRTRCDENARSLDSMDLTTSIE
KAEIHSFFQKSLTRLRGADRQLPQILLMRDLLKRGIAVHHSGILPILKEVIEMLFSRGLV
KVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGTVI
ILCKAGVHEMADLHVMMLGKPTLLQSQFRLTYTMILNLLRVEALRVTDMMRRSFSESHRD
TQTHEKRISQLKQMLSAMPSVDTEGQLSDLLPYYHTVTELKKTTEAVQHAILESVNGLKA
LSVGRVIVVNNKQHLNALGVILQVSSASVNRTFTALIICEKGNEEGKDNDNAALPHLHNT
SLFIPEGPCSHTVQKLKLQDISAITVKTLKVIPERIIDNYNKRQQPRFKLDPPGQAISTA
TQELLRLAEANPGGIATLDPVNDLQLKSVDVVEANMRLRVLQDSLRDFNCIHSPMFAEQF
ARIKERMSLQEELDQLLFLVSDQSLTLLPEYHQRIKVLQSLQYIDSGGAVQLKGRVACQI
SSHELLLTELLFENVLSPLAPEESAALLSCLVFTQNTQVEPHITNTLQEGIEQVKSVAQR
IGELQRECGIPQTAEEFVGQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTVVRCIQRLD
EVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atggatagactaaatgtgccccctccgggccccatggatctgcccatgtccctgctggag
atgggatgctctggcaggtttgagcttatcacacaccccgtgcccggccagtctttgcct
ccacatagcacgctccctcacgggcttcctcccacaaacctgaacctggagacagaagta
gagaaacagtttttaagagaccctgcatggcttcctatacacgacaaagactttgccttc
cagaagtttctcaaggtgacccagaggaaggttgacgttgactctctgctcaactgttgt
ccatctccgcttcactcgggactgtctgttgtcagagatccgaccacaggaatgctgctg
gacttcactgaggtgttactggagaacaccggcctgtctgcaaagaactcgctgtcattg
cagcgccagcctgggcctccttctgaaagccttcgaggaagcaacaccaactacccgttc
ctccccggaggaatggaggaactgacgcttgaacaaatcaagaagaaatctgagctggag
gaggaaattgactttgagagtgatttactgaaggtggcccctggactaaaagctgggatg
gactttactgacaaagatgccaaaatagcgaagccagaggtcaacctcatgtcgctcctg
tctaccgtggaaggcattagtggtttgcagcttgaggagaaggagaaagacaaagaaagt
gaagatgcccccaaactaccacgaacaaacagtcttgaagacctgggcatcaaggatgct
gcgtcatcctcgtctcctccagagaaaggaaaagaagagaaatcaaagctaaaagagaac
acagaggaaaacaagaaatgggccattcctgtgaatataacatcaccctgcgatgacttc
cacaaacgcatcccaaacccagctttcaagtggccttttgagctcgatgttttccagaag
caggccgtgctgaggctggaagctcacgactccgtgtttgtggccgcgcacacgtctgct
ggaaaaacagtggtggccgagtacgccatcgctctctcacagaaacacatgacgaggacc
atctacacatctcctatcaaggctctgtccaatcagaagttcagagactttaaaaacaca
tttggggacgttggactccttacgggcgacgtccagctcagtcctgagtcgtcctgcctc
atcatgaccactgagatcctcaggtctatgctttacaacggttcagaggtcatcagggac
ttggagtgggtgatcttcgatgaggttcactacatcaacgacgctgagagaggggttgtg
tgggaggaggttctgattatgcttcccgatcacgtcagtatcattcttctcagcgccaca
gtgccaaacgctctggagttcagtgagtggatcggtcgtattaagaagaggcacatttat
gtgatcagcacactaaagagacccgtgcccttggagcattatctgtacacggggaacagc
accaagactcagaaagagatgttcctgctggtggatgctacaggaaacttcctcaataaa
ggatactacgcagccgtcgatgctaagaaggagcgcaccagcaaacatgctcagtcattt
ggcacaaaaaacacctctcaaaacaccaccgctagtcaggaccgatcagtgtggctcacc
ctgctgcatttcctgtcccagcggcagcagaccccggtggttgcgttcaccttttctcga
acacgctgtgacgagaacgcccgctcgctggactccatggacctaaccacctccatagag
aaggcggaaattcactctttcttccagaaaagtctcactcgcctccgaggagcagaccgg
cagctgcctcagatcttgctcatgagagacctgttgaagagaggaattgcagtccatcac
agcgggatcctgccaatcctgaaggaggtcattgagatgcttttttccagaggcctcgta
aaggtgctgtttgccacagagacctttgcgatgggagtgaacatgcccgccaggaccgtg
gtgttcgacagcatcaggaaacatgatggaaccggcttccgaaatctgctgccaggtgag
tatattcagatggcgggcagagcgggccggagaggtttggacgccacgggcactgtgatc
attctgtgtaaagccggcgttcacgagatggcagatctgcacgtcatgatgctgggtaag
cccacccttctccagtcccagttcagactgacttacaccatgatcctcaacctgctgcga
gtcgaagctctccgtgtgaccgacatgatgaggaggagcttctctgaaagccacagagat
actcagacccacgagaagaggatcagccagctgaagcagatgttgtccgctatgccctcc
gtggacacagagggccagctctctgacctgttgccttactaccacacggtcaccgagctg
aagaaaaccacagaagcagtccagcacgctattctggagtctgtgaatgggctcaaggct
ctctcagtgggtcgagtcattgtagttaacaacaaacagcatctcaacgccttaggagtt
atcctacaggtgtccagtgcctctgtgaaccgcaccttcacagccctcatcatctgtgag
aagggcaacgaggaaggaaaagacaacgacaacgccgctctgcctcacctccacaacacg
tctctcttcatacctgaaggcccctgcagccacacggtgcagaagttgaagcttcaggac
atctcagccattacggtgaaaaccctcaaagtgattccagaaaggatcatcgataattac
aacaagaggcaacagccacgattcaagcttgatcctcctggtcaagccatctccacggcg
acacaggagctgcttcgattggcagaggctaaccctggcggcatagcaacccttgacccc
gtcaatgacctccagctgaagagtgttgatgtggtggaggccaacatgaggctccgtgtg
ctgcaagacagcctcagagatttcaactgcatccactcacccatgttcgcagagcagttt
gctcggattaaggagaggatgagcctgcaggaagagctggaccagctcctcttccttgtg
tcggaccagtctctgactctgctgccagaataccaccagaggatcaaggtccttcagtcc
ctccagtacatcgacagcggcggggcagtgcagctgaaaggccgcgtagcctgtcagatc
agcagccacgagctgctgctgacggagcttctgttcgagaacgtcctgagcccgctggcg
cccgaggagagcgccgccctgctgtcctgtctggtcttcactcagaacacccaggtggag
ccgcacatcaccaacacgctgcaggagggcatcgagcaggtgaagtcggtggctcagcgc
atcggagagctgcagcgggagtgtgggataccgcagacggctgaggagtttgtaggccag
ttcaagtttgggctcacagaggtggtttactgctgggccaggggaatgcccttcgcagag
atcgcccagctcacggacgtccaggagggcacggtggtccgctgcatccaacgcctggac
gaggtgctgaaggaggtgaggcaggccgcccgcatcgtgggagactccgtcctggggagc
aagatggagaaggcctccttggccatccgcagggacattgtcttcactgcctccctgtac
acccactga
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integrated database retrieval system
