Maylandia zebra (zebra mbuna): 101470032
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Entry
101470032 CDS
T02814
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
101470032 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mze03400
]
101470032 (msh6)
DNA repair and recombination proteins [BR:
mze03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
101470032 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
101470032
NCBI-ProteinID:
XP_004556097
UniProt:
A0A3P9BG33
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Position
LG13:complement(20427852..20435040)
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AA seq
1379 aa
AA seq
DB search
MAKQSSLFNFFTKSPPLVAKPKPSPSPEEADLPCSIEKSNSSPKEQAQQTPQQTKDTNKA
KKESKSKPASGGFKKLFGDKAQTTKESSPPCLFSAGALVWAKMEGYPWWPCMVVPQPLTG
QEMRGHGRDQRIHVHFFDEPPTRGWVSSNRVREYQGSDSSDAKPGGVYFCGKPVIRRAME
LADGVMFDSPEKRLKIPLCTDPSDAEEDDDEEMELDSLVVTDEEGSDEYENKSEALKPSK
VSTRLFCALMEKGSKAKRRRIIAASDSDGSDEEFKPEDAASSSEDEEDRRKESCGEKEES
TEKSDVESPIKPAKRKRPAEKSAKTKAKTPTAPSVAPKRAPAAVATDTKSRLSAFSAPES
FESQATGSGSTAGAVWDHEKLEWLQDGKRKDGKRRRQTDDDYDPSTLYVPNDFMNQITPG
IRRWWQLKSEMFDTVIFYKVGKFYELYHMDAVIGVNELGLTFMKGTWAHSGFPEIGFGRF
SDVLVQKGYKVARVEQTETPEMMEARCKTMLKPTKLDRVVKREVCRIITRGTQTYSVLDG
APSESQSKFLLSLKEKAEEESSGRCRTYGVCFIDTSVGCFHVGQFSDDRHCSRLRTLIAH
YAPAEVLFEKGNPSVETRKILKASLSSALQEGLNAGTQFWDAQKTLKTLSEEDYFKEATG
KEEGTGSSFLPALLKEMTSESDSLCLTPKEGYELALSALGGCIFYLKKCLVDQELLSMAN
FEEYVPVDVEVEKAAGPASFFAKTRQRMVLDGVTLANLEIFQNGSGGTEGTLLERLDTCS
TPFGKRLLKQWLCAPLCNPTSIRDRLDAVEDLMGVQAQATEVSDLLKKLPDLERLLSKIH
SIGTPLKSQDHPDSRAVLYEDVTYSKRKIAVFLSALEGFKTMQDIVSLFAPVSGEFRSTL
LCRVISLNSEKNGLFPDLSGELKRWDTAFDHQKARTTGVITPKAGFDPEYDQALTGIKNC
ERELQDYLDKQKKRLGCKSMCFWGTGKNRYQMEVPDSVLEKNIPDEYELKSTKKGWKRYV
TKKTERMFSELQGFEEKRDAALKDCMRMLFYNFDKNYSDWKTAVECMAVLDVLLAFSRYS
QGGDGPMARPEVVLPEDDGQVAAFIDLKGSRHPCVTKTFFGDDFIPNDIFIGCPGTGENS
EDDSLASCILVTGPNMGGKSTLMRQCGLVIILAQLGCYIPAESLRFTPVDRVFTRLGASD
RIMAGESTFFVELSETASILRHATKHSLVLLDELGRGTATYDGTAIASAVVKELAEKICC
RTLFSTHYHSLVEDYANNPAVRLGHMACMVENECEDQSQETITFLYKFITGACPKSYGFN
AARLANLPEEVIQSGHRKAREFETSTVNLRLFKKLCQFAEDATLDSTRFTSLIQLLSTL
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctcgctctttaatttcttcaccaagtctccgccgctagtcgcaaaa
ccgaagccgagtccctccccggaggaagcagacctgccttgctctatagagaagtccaac
tcctctccgaaagagcaagcacaacagactccgcagcagacaaaagacaccaacaaagct
aagaaggaaagtaagtccaagccagcgagcggaggattcaagaaactctttggcgacaag
gcccaaacaaccaaagaaagcagccctccatgcttattcagtgctggtgcccttgtgtgg
gcaaaaatggaagggtacccctggtggccgtgtatggtggtaccccagcctctgactggg
caggagatgaggggccatggtcgtgaccagcgcatacacgttcatttctttgatgaacct
ccaacaagaggatgggtcagctctaatagagtcagagagtaccaaggctctgacagcagt
gatgctaaacctggaggagtctacttctgtggcaaacctgtaatccgtcgtgcaatggag
ctggctgatggagttatgtttgacagcccagaaaaaagattaaagatacctctctgcacg
gacccatctgatgcagaagaggatgatgatgaagaaatggagcttgatagcttagttgtg
actgatgaagagggcagtgatgagtatgaaaacaaaagcgaagccctgaagccatccaaa
gtcagtacacgtttattctgtgcgttaatggaaaaaggaagcaaggccaagcgccgtcgc
attattgcggcctcagatagtgacggatccgatgaggagttcaaaccagaagacgctgcg
tcaagcagtgaggatgaagaggaccgacggaaggaaagctgtggagagaaagaagagagc
accgaaaagtcagatgtggaaagccccatcaagcctgccaagcgcaaacgtcctgcagaa
aagtcggctaaaacaaaagcaaagacacctactgctccatctgttgcacctaaaagagct
ccagcagcagttgcaactgacacaaaatctcgtttgtcagccttctctgctcccgagagc
tttgagagccaggcgactggatcaggctccactgcaggggcagtttgggatcatgagaaa
ctggagtggttgcaggatggcaagagaaaagacggcaaacggcggcgacagacagatgat
gactatgatcctagcaccttgtatgtgccaaatgactttatgaatcaaatcactcctggt
atacgtcggtggtggcagctcaaatctgagatgtttgatacagtgattttctacaaggtg
ggaaagttttatgagctctaccacatggatgctgtgattggagtcaacgagctgggactg
acattcatgaaggggacttgggcgcactctggttttccagagattggctttggacgtttc
tcagatgtactggtgcagaaaggctacaaagtggctcgtgttgagcagacagagacccca
gagatgatggaagcgcgctgtaagacaatgctcaagcccactaaattagaccgtgtagtg
aaaagagaagtgtgcaggattatcacacgtggtacccaaacctacagtgtgttggatggt
gctccttcagaaagccagagcaagttccttctgagtttgaaagaaaaggctgaagaagaa
agctccggccgctgccgcacatatggagtctgttttattgatacatcagtcggttgtttt
catgtcggtcagttctcagacgatcgtcactgctcacgcctgcgtacgctcatagcacac
tatgctcccgctgaggtgctctttgagaaaggaaacccatctgttgaaactcgcaaaata
ctcaaagcctctctgtcctctgctctgcaggaaggacttaacgcaggaacacagttctgg
gatgctcagaagactctgaaaaccctctcagaagaagattattttaaagaggcaactggc
aaggaggaagggactgggagcagctttctccccgctcttctaaaagagatgacatctgag
agtgattcactgtgccttactcctaaggagggctatgaactagcactgtctgctttgggt
ggatgcattttctacctgaagaaatgcttggtggaccaagagctgctctccatggctaac
tttgaagaatatgtcccagttgatgttgaggtggagaaagctgcaggacccgccagtttc
tttgccaagactcgtcagcgtatggtgcttgatggagtgactctggcaaacttggaaatc
tttcagaatggatcaggaggaacagaagggacactgctggagcgtttggacacctgctct
actccgtttggaaagaggcttttgaagcagtggctctgcgctcctctgtgtaaccccaca
tctatcagggacagactggatgcagtggaggacctgatgggagttcaagcccaggctact
gaggtttcagaccttctaaaaaaacttccagatttagagcgcctgctgagcaaaatccac
agtatcgggacacctctgaagagccaggaccaccctgacagcagagcagttctctatgag
gatgtgacctacagcaagcgcaagatagcagtcttcctctcagcactggaaggtttcaaa
acgatgcaggacattgtttctctctttgctccagtttcaggcgagtttcgttccacgttg
ctttgtcgagttatcagcctgaatagcgaaaagaacggcctctttcccgacctctctggt
gaactcaaacgctgggacactgcctttgaccaccagaaagcccgcactactggagtaata
acccccaaagctggctttgacccggagtacgaccaggctctgactggaatcaagaactgt
gaacgagagctgcaggattacctggacaaacagaagaagagacttggctgtaaaagcatg
tgcttctggggaactgggaaaaatcgctatcagatggaggttcctgacagcgtcttggag
aagaatatccccgacgagtatgagttaaagtctacaaagaaaggctggaagcgttatgtg
acaaagaagactgaacggatgttctcagagctgcaaggatttgaggagaagagagatgct
gcactcaaagactgcatgaggatgctcttctataactttgacaagaactacagtgactgg
aagactgctgtggagtgcatggcagtgcttgatgtgctgctggccttttctcgctacagc
cagggcggcgacgggcctatggccaggccagaggtcgtgcttcccgaggatgatggccag
gttgcagccttcatcgacctcaagggatcccgtcatccctgtgtcaccaagacctttttt
ggcgacgacttcattcctaatgacatcttcattggctgccctggcaccggtgaaaatagt
gaagatgacagtctggcctcttgcatcctcgtcacagggccaaacatgggtggaaagtct
actctaatgagacaatgtggactcgtgatcattcttgcccagctgggttgctacattcca
gctgagagcctccgcttcacaccagttgacagggtcttcactcggctgggcgcctcagat
cgtatcatggctggagaaagcaccttctttgtggagctgagtgagactgccagcatcctg
cgccatgccactaaacactcacttgtgcttttggatgaattgggaaggggcacagccaca
tatgatggcacagcaatcgccagcgctgttgtaaaggagcttgctgagaagatctgctgt
cgcactctcttctctacacattaccactccctggtggaggactatgccaacaaccctgcc
gtgcgtttgggccacatggcgtgcatggtggagaatgagtgtgaggatcaaagtcaagag
accatcactttcctctacaagttcataacgggtgcgtgtcctaagagttatggattcaat
gctgctcgactcgccaacctaccagaggaagttatccagtcaggacacaggaaggccaga
gagtttgagacaagcaccgtcaatctcagacttttcaagaagctgtgccagtttgctgag
gatgctacactggacagcacccgtttcacttccctcattcaactgctcagtactctgtaa
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