Maylandia zebra (zebra mbuna): 101471054
Help
Entry
101471054 CDS
T02814
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101471054 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mze03041
]
101471054 (sf3b1)
03036 Chromosome and associated proteins [BR:
mze03036
]
101471054 (sf3b1)
Spliceosome [BR:
mze03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101471054 (sf3b1)
Complex B
101471054 (sf3b1)
Complex C
U2 SnRNP specific factors
101471054 (sf3b1)
Chromosome and associated proteins [BR:
mze03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
101471054 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
101471054
NCBI-ProteinID:
XP_004569889
UniProt:
A0A3P9D322
LinkDB
All DBs
Position
LG16:complement(9148479..9164974)
Genome browser
AA seq
1311 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKASLLEDGEQGVGLISTGVFDPEIYEGSDSRFAGYVTSI
AANEQEEDDEDDTSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPQKIAEREDEY
KARRRQMIISPERLDPFADGGKTPDPKLQVRSYVDVMLEQNLSKEEREIRQQLAEKAKSG
DLKAVNGSAAAQAVPKRKRRWDQTADQTPSNATPKKMSSWDQADASAETPGHTPAHTPSN
SRWDETPGRPKGSETPGATPSSRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATGSVRK
NRWDETPKTERETPGHGSGWAETPRTDRGEESVGETPTPGASKRKSRWDETPASQMGSST
PLFTPGKTPIGTPAMELQTPTTAHMTPEQLQAWRWEREIDERNRPLTDEELDAMFPEGYK
VLPPPAGYVPIRTPARKLAATPTPIGGMTGFHMQAEDRTTKQMNDQPSGNLPFLKPDDIQ
YFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFN
QILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
REIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCK
SKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALA
EAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLIL
IREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQL
VDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLI
DGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAAD
LISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPI
KDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAI
RRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALM
NEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQ
HMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVALGPCRMLQYCLQG
LFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDDKNVYVRYELEYTL
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacgcacgaagatatcgaggcccagatcctggagatccagggg
atgaaggcctccctgctggaggatggagagcagggagtgggcctgatctccactggcgtt
tttgacccagagatctatgaaggcagcgacagtcgctttgcaggatacgttacttccatt
gctgccaatgagcaagaggaggacgatgaagatgatacgtcaacaagcttgttgggacaa
aagaagccagggtaccacgcgccagtggcaatacttaatgccattccacagtcagatgaa
cagtacgacccatttgcagagcatcgtccacagaagattgcagagcgggaggatgaatac
aaggctcggcgcagacagatgatcatctctcctgagcgtctcgacccctttgcagatggg
ggcaaaacaccggatcccaagctgcaggttaggtcgtatgtggacgtcatgttggagcag
aacctgtccaaagaggagagagagattcgtcagcagctggcagagaaggccaaatcaggg
gacctgaaagctgttaatgggtctgctgctgcccaagctgtccctaaacgtaagcgtcgc
tgggaccagacagctgaccaaaccccctccaatgctacacccaaaaagatgtccagctgg
gaccaagctgatgccagtgctgaaactcctggacatacccctgcacacacaccttcaaac
agccgatgggatgaaacccccggccgccctaaaggcagtgaaaccccaggggccactccc
agttcccgaatgtgggacccgactcctagccacacgcctgccggtgctgccacaccaggg
agagacacgcctggccatgccacacctggtcacgggggagccacaggaagcgttcgcaaa
aatcgctgggacgagactccaaagactgagagggagaccccaggacatgggagcggctgg
gctgagaccccaagaacagatagaggagaagagtcagtgggcgaaactccgactccagga
gccagtaagaggaagtctcggtgggatgaaacccctgccagtcagatgggctcctcaaca
ccactttttaccccaggaaaaactcccataggcacaccagctatggaattgcaaacccca
actacagcacacatgactccagagcaactgcaggcatggaggtgggagagagaaattgat
gagaggaaccgacctctaacagacgaggagctggatgccatgttcccagagggctacaag
gtgttgccgcctcctgcaggctacgtgcctatccgtaccccggcccgtaagctggcagcc
acgcccacacctattggaggcatgacgggcttccatatgcaggcagaggatcgcaccaca
aaacagatgaacgaccagccctcaggaaatctccctttcctcaaacctgatgacatccag
tactttgacaaactgctggtggaggtggatgagtccactctgagccccgaggagcagaaa
gaaaggaagattatgaagctgctgctgaagattaaaaatggaactcctcccatgagaaag
gctgctctgcgtcagatcacagataaagctcgcgaattcggagcaggtcccctgttcaac
cagatcctgcccctgctcatgtcccccaccctggaggatcaggagcgccatcttttggtt
aaagtcattgaccgcattctctacaaactggatgacctggtccgaccatatgttcacaag
atcctggtggttattgagccgctgctcatcgatgaagactattatgccagagtggaaggc
agagagatcatctctaacttggcaaaggctgctggtttagctactatgatctccacgatg
cgacctgatattgacaacatggacgagtatgtcagaaacaccaccgcccgagcctttgct
gttgtagcctccgccctcgggatcccctctctcctccctttcctgaaagctgtgtgtaaa
agcaagaagtcctggcaagctcggcacacaggcatcaagattgtgcagcaaatcgccatc
ctcatgggctgcgccattctgcctcaccttcgcagtttggtcgagattattgaacatggg
cttgtggatgagcagcagaaggtgaggaccatcagtgccctggctatagctgccctggct
gaagctgccacaccatacggtatcgagtcctttgactctgtgctgaagccactgtggaaa
ggcatcaggcaacacagaggaaagggtctggctgctttcctcaaagctattggttacctc
atcccactgatggatgctgagtatgcaaactactacaccagagaggtgatgctgatcctc
atcagagagtttcagtcccctgacgaggagatgaaaaagattgtgctcaaggtagtgaag
cagtgctgtggcacagatggtgtcgaggccaactacatcaagactgaaatcctgcccccc
ttcttcaagcatttctggcagcacaggatggctctggacagacgcaactacagacagctg
gtggacaccacagtggagttggctaacaaagtgggagcagcagagatcatctcacgtatc
gttgatgacctgaaagacgaggcagaacagtacaggaagatggtgatggagaccattgaa
aaaatcatgggcaacttgggcgcagctgacatcgaccacaagctggaggagcagctgatc
gacggtattctgtatgcctttcaggagcagacgacagaggattctgtcatgctgaatggt
ttcggtacagtggtgaatgctcttgggaagcgcgtgaaaccctacctgccacagatctgt
ggtacggtactgtggcgtctcaacaacaagtcggccaaggtccgtcagcaagctgctgac
ctgatctcccgcacggccgtggtcatgaagacgtgccaggaggagaagctgatgggtcat
ttgggagtcgtgctgtacgagtatctgggagaggagtaccctgaggtgctgggcagcatc
cttggagcgctgaaggccattgtgaacgtcattggcatgcacaagatgaccccaccaatc
aaagacctgcttcctcgtttgactcccatcctgaagaacagacatgagaaagtccaggag
aactgcatcgacctggtgggcaggatcgctgacaggggtgctgagtacgtgtctgccagg
gagtggatgaggatctgtttcgagttgctagagttgctcaaggcacacaaaaaggcaatc
cgcagagccaccgtcaacacgtttggttatatcgccaaagccatcggtcctcacgatgtc
ttggccactctgctcaataaccttaaagtccaggagcgacagaacagggtctgcacgacc
gtagccatcgccatcgttgctgagacctgttcacccttcacggtgctgccggccctaatg
aacgaataccgcgtgcctgagctcaacgtgcaaaacggtgtactgaagtccctctccttc
ctgttcgagtacattggagagatgggcaaagactacatctatgccgtcacgccgctgctg
gaagatgctctcatggacagagacctggtccatagacagacagccagcgctgtggttcag
cacatgtccctcggtgtctacggttttggctgcgaggactccctcaaccacttgttgaac
tacgtgtggcccaacgtatttgagacgtcacctcacgtcatccaggctgtgatgggcgct
ttggaggggctgagggtcgctctcgggccctgccgcatgctgcagtactgcttacagggt
ctgttccatccagccaggaaagtgagggacgtctactggaagatctacaactccatctac
atcggctctcaggacgccctgattgctcactacccacaggtctacaacgacgacaaaaat
gtctacgtccgctacgagctcgaatacaccttgtaa
DBGET
integrated database retrieval system
