Maylandia zebra (zebra mbuna): 101471175
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Entry
101471175 CDS
T02814
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101471175 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mze03019
]
101471175 (mtrex)
03041 Spliceosome [BR:
mze03041
]
101471175 (mtrex)
03009 Ribosome biogenesis [BR:
mze03009
]
101471175 (mtrex)
03016 Transfer RNA biogenesis [BR:
mze03016
]
101471175 (mtrex)
Enzymes [BR:
mze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101471175 (mtrex)
Messenger RNA biogenesis [BR:
mze03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
101471175 (mtrex)
Spliceosome [BR:
mze03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101471175 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
101471175 (mtrex)
Ribosome biogenesis [BR:
mze03009
]
Eukaryotic type
Pre-60S particles
Helicases
101471175 (mtrex)
Transfer RNA biogenesis [BR:
mze03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
101471175 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
101471175
NCBI-ProteinID:
XP_004549778
UniProt:
A0A3P9AS90
LinkDB
All DBs
Position
LG7:complement(47773493..47789640)
Genome browser
AA seq
1037 aa
AA seq
DB search
MADTFGDGLFSVFDDEQQNTTNKKVPSSVAAEPGKAAAKNETDRDVGPSARVKREADSDG
GEEVVFVKKPRHEAVSANELNLAEFMPQVKVEQVETVEGCSHEVALPASEEYKPLKPRVG
KAAKEYPFVLDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVI
FDEIHYMRDTERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDAGDSGGSSGGAKWDPKGR
KGGTKGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNRDDEKRLVEEVF
NNAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATET
FAMGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMS
PAVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEK
IKKLEEQYHTIEIPNEESVVTYFKIRQQLAKLSKEIQEFIHKPKYCLPFLQPGRLVKVKN
EDADFGWGVVVNFCKKTNVKTTTDSEPLYVVEVLVHCSKDSVKDAATEAAKPAAPGETGE
MQVVPVMLHLLTSVSSVRLYIPKDLRPYDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGI
KDPALKKVIQKIEAFEHRMYTHPLHSDPNLESVYSLCEKKALIAADVRTAKRDLKKARTI
LQMDQLKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLTVEQA
TALLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEESYLNQFKPH
LMDVVYAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSASKAIGNTELENKFAE
GITKIKRDIVFAASLYL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggctgacacctttggagacggtttgttcagcgtgtttgacgatgaacaacaaaatacc
acaaataaaaaagtaccgtcgagtgtggcggcagaaccggggaaagctgcagccaaaaat
gaaacagacagagatgtcggtccgtctgcccgagtcaagagagaggcagacagtgatggt
ggagaggaagtggtgtttgtgaagaaacctcgacatgaggcagtttcggcgaatgaactg
aatcttgcagaatttatgcctcaggtgaaggtggagcaagtggaaacagtggaaggatgt
tcacatgaggttgctcttcctgccagtgaggaatataaacctctgaaaccacgagtggga
aaagcagccaaggagtaccctttcgttctcgatcccttccagcgggaggccatattatgt
attgacaacaaccagtctgtgcttgtgtctgcacacacctctgcagggaagactgtttgt
gctgaatatgccattgcgctggctctcagggagaagcagagagtgatcttcaccagcccc
atcaaggctctctccaaccagaagtacagagagatgtacgaagagtttcaagatgtagga
ctgatgacaggtgacgtcaccatcaaccccactgcctcttgcctcgtcatgacaacagag
attctgaggagcatgctgtaccgaggctctgagatcatgagggaagtggcgtgggtcatc
ttcgatgagatccattacatgagagacacggagcgtggcgtggtttgggaggagaccatc
attcttcttcccgataatgtgcattatgttttcctgtcagccaccatccccaatgccaaa
cagtttgctgagtggatttgtcacttacacaagcagccatgccatgtggtctacacagac
taccgccccactccactgcaacactatatctttccagcagggggtgatggactccacctg
gttgttgatgaaaatggagaattcagagaggacaatttcaacacagctatgcaggtgctg
agagatgctggggattctgggggcagcagcggaggtgccaagtgggatccaaaaggaagg
aaaggaggcactaaaggcccatcaagcgtgttcaagatagtgaagatgatcatggagagg
aacttccagccagtgattattttcagcttcagtaagaaagagtgtgaggcctacgctctg
caggtggctaaactggactttaacagagatgatgagaaacgtctggtggaggaggttttc
aacaatgcagtggactgtctatcagatgaggacaagaaactgcctcaggtcgagcatgtg
ctgccactgttaaagagggggatagggatccatcatggaggcctactgcccatcctgaaa
gagaccatagagatcctcttttctgaaggcctcctcaaggccttgtttgccacagagaca
ttcgccatgggcatcaacatgccagctcgcactgtgctcttcaccagtgcacgcaagttt
gatggcaagaatcaccgctttataacatcaggtgagtatatccagatgtctgggcgtgct
gggaggagaggaatggacgacagagggattgttattttcatggtggatgagaagatgagc
ccagctgtgggtaaacagctactcaagggctctgcagatcctttgaacagtgccttccac
ttaacctacaacatggtgctcaacctgctgcgtgtggaggagatcaacccagaatacatg
ctggagaagtctttctaccagttccaacactacagggctttgcctggtgtagtggagaaa
attaagaagttggaggagcagtaccacaccattgagattcccaatgaagagagtgtggtc
acttactttaaaatcagacagcagctggccaaactgagtaaagaaatccaggagttcatc
cacaaacccaaatactgcttgcccttcttacagcctgggcgacttgtcaaggtaaaaaat
gaggatgctgactttggctggggagtggttgtaaacttttgcaagaagactaatgttaag
acgactacagactcagagccgctgtatgttgtggaggttttggtccactgtagtaaggac
agtgtgaaagatgctgcaactgaagctgctaaacctgccgctccaggggagactggagag
atgcaggtggttccagtgatgctccatctcctcacttctgtcagctcagttcgtctttac
atccccaaagacctgaggccctacgacaacagacagctcatgctcaagtccatacaggag
gtgcagaaacgttttccagatggtgttcctctgcttgaccccatagatgacatgggcatc
aaagaccctgcattaaagaaagttattcagaagattgaggcctttgagcaccgcatgtac
acccatcccctgcacagtgaccccaacttggaatctgtctattctctctgtgagaagaaa
gctctgatcgcagcagatgttcgaacagccaagcgagacctcaaaaaagcgcgaaccatc
ttgcagatggaccagctgaagtgcagaaagagagttcttcgaagacttggctttgccagt
ccctctgacgtcattgagatgaaagggcgggtcgcctgtgaaattagcagtgccgacgag
ctcctgctgactgagatgatgttcaacggtctcttcaatgatctgacagttgagcaagcc
accgccctgctgtcctgctttgtcttccaggaaaacgccagcgagatgccaaaactaact
gagcagctcgctgcaccgctgagacagatgcaggaatgtgcaaagcgcatcgccaaagtg
tcagcagacgccaagctggaggtggacgaagagagctatctgaaccaatttaaaccccac
ctaatggacgtggtttatgcctgggccaacggggccacgtttgctcaaatctgcaaaatg
accgacgtctttgaagggagcatcatccgttgcatgcgtcgtctggaggaggtcctgaga
caaatgtgctctgcatctaaagccatcggcaacacagagctggagaataagtttgctgaa
ggaataacaaagatcaagagagacatcgtctttgctgccagtctctacttatag
DBGET
integrated database retrieval system
