Maylandia zebra (zebra mbuna): 101472794
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Entry
101472794 CDS
T02814
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101472794
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mze03019
]
101472794
03036 Chromosome and associated proteins [BR:
mze03036
]
101472794
Enzymes [BR:
mze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101472794
Messenger RNA biogenesis [BR:
mze03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
101472794
mRNA degradation factors
5'-3' decay
Decapping complex
101472794
Chromosome and associated proteins [BR:
mze03036
]
Eukaryotic type
Gene silencing
piRNA pathway
101472794
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
MS_TIM-barrel
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
101472794
NCBI-ProteinID:
XP_004569268
UniProt:
A0A3P9DL68
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All DBs
Position
LG22:8355903..8365433
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AA seq
487 aa
AA seq
DB search
MATARTESVGPVVMGLNKQNGQLRGQTKPAAVQPAPTTQGKTLGAPQKAGGASQDGGGIK
FGDDWKKSLQLPPKDNRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQAIVMVPTRELALQMSQICIQL
SKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDKVQMMVMDE
ADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKAIEDQLVTDIKPIPSSIDKSLYVAEYHSTSGDCDVEEVEE
KRQQDST
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccgccagaacagaaagtgtgggcccggtcgtcatgggactgaataagcagaac
gggcagctcagagggcagaccaaaccagctgcagtccagccagcaccaacaactcaagga
aagactttgggtgctccccagaaagcaggaggagcctctcaggacggaggtggtattaag
tttggagatgactggaaaaagagcctacagctccctcccaaagacaacagggtcaaaacc
tcagatgtgacgtccacaaaggggaatgagtttgaagattattgtctcaaaagagaactc
ctgatgggcatctttgagatgggttgggagaaaccttcccctattcaggaggagagcatt
cccatcgccctgtctggacgggacattctggcccgagccaagaatggaacagggaaaagt
ggagcctatctcatcccactgctggaaaggatagacctgaaaaaggaccacatacaggcc
attgtcatggtgcccactcgtgagctggcactgcagatgagccagatctgcatccagctc
agcaaacacctgggaggagtcaaagtaatggccaccaccgggggcaccaacctgagagat
gacatcatgcgtctggatgagaccgtgcatgtggtcattgccacgcctggcaggatcctg
gacttgataaagaagggagtggcaaaggtggataaagtccagatgatggtgatggatgag
gcggataagctgctgtctcaggattttgtggtgcttattgaagatattattagtttcctg
gccaagaacagacagatcctgctctactctgcaaccttccccatcagtgtgcagaagttc
atggccaagcaccttcagaagccctatgagataaacctgatggaggagctgactctgaag
ggcattactcagtactatgcctacgtcacagagaggcagaaagttcactgcctcaacaca
ctcttctccaggcttcaaatcaaccagtcaatcatcttctgtaactccactcagagagtg
gagctcttggccaagaagatcactcagctgggctactcctgcttctacatccacgctaaa
atgatgcaggaatacagaaaccgtgtgttccacgacttcagaaatggactgtgcagaaat
ctggtgtgcactgatctgttcaccagaggaattgacatccaggcggtaaacgtggttatc
aacttcgacttcccgaagaacgcagagacttacctgcatcgtattggaagatcagggcgg
tttggacacctgggcttggccatcaacctgatcacatcggaggatcgcttcaacctgaag
gccattgaagaccagctggtgaccgacattaagcccattcccagcagcatcgacaagagc
ctctatgtggccgagtaccactcaactagcggagattgtgacgtggaggaggtcgaggag
aagcgccaacaggacagcacctaa
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