Maylandia zebra (zebra mbuna): 101473796
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Entry
101473796 CDS
T02814
Symbol
col23a1
Name
(RefSeq) collagen alpha-1(XXIII) chain isoform X2
KO
K24355
collagen type XXIII alpha
Organism
mze
Maylandia zebra (zebra mbuna)
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mze00536
]
101473796 (col23a1)
Glycosaminoglycan binding proteins [BR:
mze00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101473796 (col23a1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
101473796
NCBI-ProteinID:
XP_004571741
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Position
LG2:complement(22852053..22981807)
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AA seq
623 aa
AA seq
DB search
MDTVGDSIGESKPVCQCTPKSRSQRWVPGFPIALCLLMSMSSITVCLLMSLKTYQLENRL
QMELDKASIFQHPKRAFVNEDGTLLSELSTPIGKLVEEKVVALTPKVRPARDVGQECSCP
PGPPGKRGRMGRRGEPGLPGKAGRDGYPGPLGLDGKPGPPGLKGSQGPSGPKGEKGDQGD
IGPRMVFPRTDHGFLSREPTNSFQRLFLKGDQGQAGPAGPPGPPGPPGPRGPPGNTGKDG
PRGLPGEPGFPGRDGAEGPQGLPGRPGEDGQPGYPQQGVPGQKGEPGNAVKGERGMDGLP
GLKGDKGERGEQGLQGAMGFPGEKGTPGASDIIDFNGKLLDALQAINTISVSGPPGPPGP
PGPAGEKGELGLPGPAGVDGEKGLKGDMGETGPPGMRGEKGEMGLSGPTGMDGQKGEKGD
CRLDDNLVQMISQPGPPGPPGPPGIPGHPGSMGLHGMPGPKGEPGVGIKGEKGDSGPPGS
RGSDGLQGPPGSPGLVGLPGAKGEKGRLGEPGLDGFPGLRGEKGDRGEKGDKGDRGTVGK
RGLKGQKGEQGPPGLDQPCPVGCDESKEQSVKAAVSSPATPPLPPSGPEGPCPLGRDGLP
IPGCWHKEEMARQKLKRKRLSQP
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggatacggtcggcgactctatcggagaaagtaagccggtgtgccagtgtacccccaag
tcccggagccagcgatgggtgccaggtttccccatcgctctgtgcttgctgatgtcgatg
agctccatcaccgtgtgtcttctgatgagcttgaagacctatcagctggagaaccgactg
cagatggagttggacaaggcgtctatcttccaacacccgaaaagggcgttcgtaaacgag
gatgggaccctactgtcagagttgagcaccccaataggaaagctcgtggaagagaaagtg
gtggctctgacgccaaaagtgcggccagcgagggatgttggccaagagtgctcctgtcct
ccagggcctccaggaaaacgtggaaggatgggaagaagaggggaacctgggcttcctggc
aaggctggacgggatggatacccgggtccacttggcttagatggcaaaccaggtccacca
ggtctgaagggcagccagggaccatccggacccaagggagaaaagggtgaccaaggagac
attgggccaaggatggttttccccagaactgaccacggctttctctcgagagagccgacc
aacagctttcagagactctttctgaagggtgatcagggtcaggctggacctgctggtcct
cccggtcccccaggtcctccaggtccccgtggcccccctgggaacactggtaaagatgga
cctcgtggtcttcccggagagccaggttttcctggtcgcgatggagctgaggggccacag
ggactgcctgggaggccgggagaagatgggcagcctggttatccacaacagggtgtcccg
gggcaaaagggcgagcctgggaatgcagtaaaaggagagcgaggcatggatggacttcca
ggattaaagggtgacaaaggagaaagaggagagcaaggactacagggagccatgggtttt
cctggtgagaagggcaccccgggtgcttcagacatcatcgacttcaatgggaagcttcta
gatgctttgcaggccatcaacaccatcagtgtttcggggccacctggaccaccaggacct
ccaggacctgcaggggaaaagggtgagctcgggttacctggaccagcaggagttgacggg
gagaagggactcaaaggtgacatgggtgagacaggacctcccggcatgagaggagagaaa
ggcgagatgggtctctctgggcctactggtatggatggacagaaaggagaaaaaggcgac
tgcagactagatgacaacttggttcagatgatttcccagccaggcccacctggcccacca
ggcccaccgggaatacctgggcaccctggatccatggggctgcatggaatgcctggtcct
aagggtgaaccaggagtggggataaagggagagaagggagacagtggtcctcctggatcc
agaggatcagatggcctccaaggtccacctgggtctccgggcttagtgggccttcctggt
gccaagggagagaaaggaagactaggagagcctggacttgatggtttcccaggcctgagg
ggagaaaaaggtgatcgaggcgaaaaaggagacaagggtgacagaggaacagtagggaag
agaggtctaaagggccagaagggtgaacaaggtcctccgggtctggaccagccttgtcct
gtggggtgcgatgagtctaaagagcagtctgtgaaggcagcggtttcttctcctgcaact
cctcctcttcctccttctggccctgagggcccctgtcctctgggacgtgacgggctaccc
ataccgggctgctggcacaaggaggaaatggcaaggcagaagctcaaacgcaagcgtctc
tctcagccctga
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