Maylandia zebra (zebra mbuna): 101474592
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Entry
101474592 CDS
T02814
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101474592 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mze03041
]
101474592 (prpf40a)
Spliceosome [BR:
mze03041
]
Complex A
U1 snRNP components
U1 related factors
101474592 (prpf40a)
Complex B
101474592 (prpf40a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
101474592
NCBI-ProteinID:
XP_004555663
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Position
LG16:complement(19649894..19665282)
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AA seq
879 aa
AA seq
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MSSSEANNGPSQAPPYPGVPPAAIPPPFMGPPGIPPHFPPIGMPPMGQRPPSMTPMPPGI
IPPGIMPPMGAPPMGQMPGMMPPMMPGMMMPPRIPAAAVQPTGPPGVDSTAAAPGTSSTT
NGSPQEEQPKKKSVWTEHKSLDGKTYYYNTETKQSTWEKPDELKSPAEQMLSKCPWKEYK
SDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTAEAAAPGTTAAPAVQADNVAPA
ATVVEAETAVVVSEEQPSQAAVTQTPEVKTADAPVASSETSAATEAVASVEVVKEERPEL
QKKTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKLIINDPRYSALPKLSEKKQAFNA
YKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFGELEVWSCVPERD
RLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTF
AEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNREAFQKFLDELHD
HGQLHSMSAWMEMYPTLSSDIRFANMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDIL
KDKGFLVEVNTSFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKM
KRKEAAFKNMLKQATPPLEPETTWEGVRERFLKEPAFEDVTLESERKRIFKDFMHVLEHE
CQHHHSRTKKHSKKSKKHHRKRSRSRSGSESEDEEYHKKKKRSQSKSPSERSSSGESERS
YKKSKKHKKKGKKRRHKSASPDSDNEKKGRDRDGKREKEVEKEKENDKSRGKSRSESKQK
SPKRKAAKEEGGWDTSGSELSEGELEKRRRNLLEQLDAP
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgtcggaagctaataatgggccgagccaagcaccgccttatccaggtgtaccg
cccgcggcgatacctcccccatttatgggaccacctggaataccacctcatttccctccc
attggaatgccccctatgggacagcgacctcccagcatgacaccaatgcctcctggtata
attcccccgggtataatgccaccaatgggggcaccgccaatgggacagatgccaggcatg
atgccacctatgatgccaggaatgatgatgccccctcgcataccagctgcggctgtacag
ccaacgggaccgcctggtgttgactccacagctgctgctcctggaacatctagtaccaca
aatggatccccgcaggaagaacagccaaagaagaaatccgtgtggactgaacataaatca
ctagatggaaagacctattattataacacagagactaagcaatccacatgggagaaaccg
gatgaactcaaatctcctgcagagcaaatgctgtcaaaatgcccctggaaggagtacaag
tcagacacagggaagccttattattacaactctcagacaaaggagtcaagatggacaaaa
cccaaagagctggaggacctggaagctatgatcaaagcagaggagaatgggactgcagag
gcagcggctcctggaaccactgcagctcctgctgtgcaagcagataatgtagctcctgca
gcgactgtagtggaggcggaaactgcggtagtagtctcagaggaacaaccatcccaggca
gcagtgactcaaacacctgaggtgaagacggctgatgcacctgtggcttcctctgagact
tcagcagctaccgaggctgtagccagtgtcgaggttgtaaaagaagaaaggccagaactt
cagaagaaaacgtacaaatggaatacaaaagaagaagccaagcaggccttcaaagagctg
ctgaaggagaagggtgtatcctccaactcctcttgggaacaggccatgaaattgattatc
aatgatcctcgctacagtgcacttccgaagctgagcgaaaagaagcaggcgttcaatgca
tacaaagtccagacagagaaggaagaaaaggaggaggccagaattaaatacaaagagtca
aaagagacttttcagagattcttggagaaccatgaaaagatgacatctaccactagatac
aagaaagcagaacagatgtttggtgagcttgaagtgtggagctgcgtgccagagagagac
aggctagagatctatgaagacgtgttgttctaccttgctaaaaaagagaaggagcaagcc
aagcagctgagaaaaaggaactgggaagctttgaagaacattttggacaacatggcaaac
gtcacataccgcaccacctggtctgaggcccagcagtatctgctagataaccctaccttt
gcagaggatgaggagctgcaaaatatggacaaagaagatgcccttatatgttttgaggag
catattcgggctctggagaaggaggaggaggaagagaagcaaaagacacttctcagggaa
agaagacggcagcgcaagaatagagaggccttccagaaatttctggacgagcttcatgat
cacggccaacttcactctatgtctgcttggatggagatgtacccgacactgagctcagac
atccgctttgccaacatgctgggccagccgggttccactcccctggacctcttcaaattt
tatgtggaagacttgaaagcacgctatcatgatgaaaagagaataatcaaagatattctt
aaggacaaaggattcctggttgaagtcaacaccagctttgatgactttggatcagtcatc
agctcggataagagagctaccacgctggatgcaggaaatataaagctagccttcaacagt
ttgcttgagaaagctgaagccagagagagggagcgagagaaggaggaggccaggaagatg
aaaaggaaagaagctgctttcaagaacatgctgaagcaggccacaccgccactggagcca
gagactacgtgggagggagtcagagagaggttcctaaaagagcctgcctttgaagacgtg
actcttgagtcggagaggaaaagaatattcaaagatttcatgcatgtcttggagcatgag
tgccagcatcaccactcgaggaccaagaaacactcaaagaagtccaaaaagcaccacagg
aagcgctcccgctctcgatcaggctccgagtctgaggatgaggaataccacaagaagaaa
aagaggtcacagtccaaatccccctcagaacgttcatctagtggagaatctgagagaagc
tataaaaaatccaagaagcacaagaagaagggcaagaagagacgccacaagtctgcgtct
ccagattctgacaacgagaagaaaggaagagaccgtgatgggaagcgagaaaaggaggta
gagaaggagaaagagaacgacaagtctcgggggaaatctcgctcagagtccaaacagaaa
tctcccaaaaggaaagcagccaaagaggagggtggctgggacacgtcgggcagtgagctg
agtgaaggagagctggagaaaaggagaagaaacttgctggaacagctggacgcaccttga
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