Maylandia zebra (zebra mbuna): 101476376
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Entry
101476376 CDS
T02814
Name
(RefSeq) nuclear receptor ROR-alpha
KO
K08532
RAR-related orphan receptor alpha
Organism
mze
Maylandia zebra (zebra mbuna)
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mze03000
]
101476376
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
mze03310
]
101476376
Transcription factors [BR:
mze03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
101476376
Nuclear receptors [BR:
mze03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
101476376
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
101476376
NCBI-ProteinID:
XP_004566445
UniProt:
A0A3P9CJ70
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Position
LG1:35482873..35535632
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AA seq
487 aa
AA seq
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MYFVITAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCL
IDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLKQQQQQGHHLL
SHPSLGSPSPVESESLSSHYTLSSTGLTELPDEGGHYVEQNSPEGGSLSSKGDSAGGGEG
GGGGFYLDIQPSPDQSGLDINGIKPEPLCDYGSSNGFFPYCSFSNRDVPPTVPMAELDYL
AQIVSKSHLETCQYLREELQQMSWQSFLQDEVESYQSKPQEVMWQLCAVKITEAIQYVVE
FAKRIDGFMDLCQNDQIVLLKAGSLEVVFLRMCRVFDSQNNTVFFDGKFAGPEVFKALGC
DDFITAVFDFAKSMCSLHLSEDELALFSAFILLSADRSWLQEKLQVEKLQQKTQLALQHV
LQKNQREDEVLNKLRCEASALRSLCSRHTEKLCTFRAVYPDIVRSHFPPLYKELFGADLE
LTLQNSD
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgtattttgtcattactgccatgaaagctcagattgaaataatcccctgtaagatttgt
ggagataaatcatcagggatccactacggggtcatcacctgtgaaggctgtaagggtttc
ttcaggcgtagtcagcagagtaacgccacctactcgtgtcctcgccagaaaaactgtctg
atcgaccgaacgagccgaaaccgctgccagcactgccgtctgcagaaatgtctcgctgtg
ggcatgtcccgagacgctgtaaagtttggtcgcatgtctaaaaagcagcgggacagtttg
tacgcggaggtgcagaagcaccgcctcaagcagcagcagcaacaaggtcaccacctcttg
tcccatcccagcctcggcagcccgagtccagtcgagtccgagtcgctgtcctctcactac
accctgtcctccaccggcctcacagagctacctgatgaggggggacattacgtggaacag
aactcgcctgaaggcggatctttgtcatctaagggagactctgcaggaggaggggaagga
ggtggtggggggttctacttggatatccagccgtctccggatcaatccggacttgatatt
aatggcatcaaaccggagcccctgtgcgactatggatccagtaacggcttttttccatat
tgctccttcagcaacagagacgtgccacccacggtgcccatggctgagctcgattacttg
gcccagatcgtctccaagtctcacctggagacatgtcagtacctcagggaggagctgcag
cagatgagctggcagagcttccttcaggatgaggtggaaagctaccagagcaagcctcag
gaggtgatgtggcagctctgtgctgtgaagatcacagaggccattcagtatgtggtggag
tttgctaaacgcatcgacggcttcatggatttgtgccagaatgaccagatcgtactgctg
aaagctggctctctggaggtcgtctttctacgaatgtgccgagtgtttgactcgcagaac
aacactgtcttcttcgatgggaagtttgcaggtcctgaagtcttcaaagctttaggctgt
gatgatttcatcacggcggtgttcgactttgctaagagcatgtgctcgctgcacctatca
gaggacgagcttgctctcttctcagcgttcattctgctttctgcagatcggtcgtggctg
caggagaagctgcaggtggagaagctgcagcagaagactcagcttgctctgcaacatgtg
ctgcagaagaaccagagagaggacgaagtcctgaacaagctcagatgtgaggcgtcagcg
ttgcgttcgctgtgcagtcgacacactgagaagctgtgcacgttcagagccgtttacccg
gacatcgttcgatcgcacttccctcctctttataaggagctgttcggtgctgacctcgaa
ctgaccctgcagaacagcgactga
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