Maylandia zebra (zebra mbuna): 101476419
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Entry
101476419 CDS
T02814
Symbol
col1a1
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze04510
Focal adhesion
mze04512
ECM-receptor interaction
mze04518
Integrin signaling
mze04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101476419 (col1a1)
04518 Integrin signaling
101476419 (col1a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101476419 (col1a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101476419 (col1a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mze00536
]
101476419 (col1a1)
Glycosaminoglycan binding proteins [BR:
mze00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101476419 (col1a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
101476419
NCBI-ProteinID:
XP_004572575
LinkDB
All DBs
Position
LG4:complement(291073..310516)
Genome browser
AA seq
1447 aa
AA seq
DB search
MFSFVDLRLALLLSAAVLLVRAQGEDDRTGKSCTLDGQVFADRDVWKPEPCQICVCDSGT
VMCDEVICEDTTDCPNPIIPHDECCPICPDDGFQEPQTEGTVGARGPKGDRGPAGPPGRD
GMPGQPGLPGPPGPPGPPGLGGNFSPQMSGGYDDKSPAMPVPGPMGPMGPRGPPGPPGSS
GPQGFTGPPGEAGEPGSPGAMGPRGAAGPPGKNGEDGESGKPGRPGERGPSGPQGARGFP
GTPGLPGIKGHRGFSGLDGAKGDSGPAGPKGEAGTPGENGTPGAMGPRGLPGERGRAGAT
GAAGARGNDGAAGAAGPPGPTGPAGPPGFPGGPGAKGDGGAQGARGPEGPGGARGEPGNP
GPAGPAGPSGNPGADGAAGAKGVPGAAGVAGAPGFPGPRGPPGPQGAAGAPGPKGNTGEA
GAPGSKGEPGAKGEAGVSGVQGPPGPPGEEGKRGARGEPGAAGARGGPGERGAPGGRGFP
GSDGPAGPKGANGERGAPGLVGAKGATGESGRTGEPGLPGAKGMTGSPGNPGPDGKMGPS
GAPGQDGRPGPPGPGGNRGQPGVMGFPGPKGAAGEAGKPGERGTMGPTGPVGAPGKDGDV
GAQGPSGPAGPAGERGEQGPAGSPGFQGLPGPQGAIGESGKPGEQGVPGEAGAPGPAGAR
GDRGFPGERGAPGPVGPAGARGSPGASGNDGAKGDAGAPGTPGAQGPPGLQGMPGERGAA
GLPGLRGNRGDQGPKGADGTGGKDGPRGLTGPIGLPGPAGSPGDKGESGAQGPVGPSGAR
GPPGERGEAGPPGPAGFAGPPGADGQPGAKGEPGDNGAKGDSGPPGPAGPTGAAGPQGPV
GNTGPKGARGPAGPPGATGFPGAAGRVGPPGPAGNAGPPGAPGPAGKEGPKGNRGETGPA
GRPGELGAAGPPGPPGEKGSPGADGAPGSSGIPGPQGIAGQRGIVGLPGQRGERGFPGLP
GALGEPGKQGPGGPNGERGPPGPMGPPGLAGAPGESGREGTPGNEGAAGRDGAPGPKGDR
GESGPAGASGAPGPPGAPGPVGPAGKTGDRGETGPAGPAGAAGPAGPRGPAGATGLRGDK
GEAGEAGERGMKGHRGFTGMQGPPGPAGPSGESGPAGAAGPAGPRGPSGAAGSAGKDGMS
GLPGPTGPPGPRGRSGEMGPAGPPGPPGPPGAPGAPGGGFDLGFMVQPQEKAPDPFRMYR
ADDANVLRDRDLEVDSTLKSLSQQIEQIRSPDGTRKNPARTCRDLKMCHPDWKSGEYWID
PDQGCTQDAIKVYCNMETGETCISPTQREVAQKNWYISKNIKEKKHVWFGEAMNDGFQFE
YGSEGSLPEDVNIQMTFLRLMSTEASQNITYHCKNSVAYMDAAAGNLKKALLLQGSNEIE
IRAEGNSRFTYSVLEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQEFGFE
VGPVCFL
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatttgcggctggcgctgctgctcagcgcagcagtgcttctggtc
agagcgcagggcgaggacgaccgcacgggcaaaagctgcactctggacggccaggtgttt
gcagaccgggatgtgtggaagccggagccatgtcagatctgtgtgtgcgacagtggcacg
gtgatgtgcgatgaggtcatctgcgaggatacaacggactgccccaaccccatcatcccc
cacgacgagtgctgccccatctgccccgatgacggcttccaggagcctcagactgaggga
accgtgggagctcgtggacccaagggagacaggggtcctgctggtccccctggtagagat
ggtatgcctggccagcctggactgcctggacctcctggcccacctggaccccctggcctt
ggtggaaacttctcccctcagatgtctggtggctacgatgacaaatctcctgccatgcct
gtgcctggacccatgggcccaatgggaccccgtggacctcctggacctcctggatctagc
ggacctcagggattcactggcccccctggtgaggctggagagcctggatctcctggtgcc
atgggtccccgtggagctgccggcccccctggaaagaacggcgaggatggtgagtctggc
aaaccaggtcgccccggtgagcgtggaccttctggccctcagggagctcgtggtttccca
ggaaccccaggtctgcctggcatcaagggacatagaggattcagtggcctggatggtgcc
aagggagacagtggccccgctggacccaagggagaggctggcacccctggtgagaatgga
acccctggtgctatgggacctcgcggtctgcctggtgagagaggccgtgctggtgctact
ggagctgctggagctcgtggtaacgatggcgctgctggtgctgctggacctcctggtccc
actggccccgctggaccccctggattccccggtggccctggagccaagggtgatggtgga
gctcagggtgctcgtggacccgagggccctggtggagctcgtggtgagcccggaaacccc
ggacctgctggcccagctggaccttccggaaaccctggagctgatggagccgctggagct
aagggagtacctggtgctgctggagttgctggagctcctggtttccccggaccccgtgga
cccccaggacctcagggtgctgctggtgcccccggacccaagggcaacactggtgaggct
ggtgccccaggatccaagggagagcctggtgccaagggagaggctggtgtttcaggagtt
cagggaccccctggacctcctggtgaggagggcaagagaggagccagaggagagcctggt
gctgcaggagcccgtggtggccctggagagagaggtgcccctggtggtcgtggtttccct
ggttctgatggccctgctggacccaaaggtgccaatggtgagcgtggtgcccccggtctt
gttggagctaaaggtgccactggtgagtctggccgcactggtgagcctggtctgcccgga
gctaagggaatgactggcagccccggcaaccctggacctgatggcaagatgggaccttct
ggagcccccggacaagatggccgccctgggcctcctggccctggtggaaatagaggccag
cctggagtcatgggattccccggacccaagggtgctgctggtgaggctggaaagcccggt
gagagaggaaccatgggacctactggacctgttggtgcacctggaaaggatggtgatgtt
ggcgcacagggcccctctggacctgctggtcctgctggtgagagaggagagcagggacct
gctggatctcctggattccagggtctcccaggaccccagggagccattggtgagagtggc
aagcccggagagcagggtgtacctggcgaagctggagccccaggacctgctggagctaga
ggcgatagaggattccctggtgagcgtggtgcacctgggccagttggacctgctggtgcc
cgtggatccccaggagcctctggaaatgatggtgctaagggagatgctggagcccctggt
actcctggtgctcagggtcctcctggactgcagggaatgcctggtgagcgcggtgccgct
ggtcttccaggactgagaggaaacagaggtgaccaaggacctaagggtgctgatggaaca
ggaggtaaggatggtcctcgtggtttgactggaccaattggacttcctggacctgctggc
tccccaggagacaagggagagtctggtgcccaaggacctgttggaccttctggagcccgt
ggaccccctggtgagcgtggtgaggccggaccacctggacctgctggattcgctggacct
cctggtgctgatggacagcctggtgctaagggagagcctggagataatggtgctaaggga
gattctggtcctcccggacctgctggacccactggtgctgcaggacctcagggtcccgtt
ggaaacactggccctaagggagcccgtggacctgctggacctcctggtgctactggcttc
cctggtgctgctggcagagttggacctcccggccccgctggtaacgctggacctcccgga
gctcctggaccagctggcaaggagggacccaaaggaaaccgtggtgagactggacctgct
ggtcgccctggtgagttgggtgctgctggacccccaggacctcctggagagaagggtagc
cctggtgctgatggtgctcccggtagttctggtattcctggacctcagggtattgctgga
cagcgtggtattgttggtctgcctggacagagaggcgagagaggtttccctggacttccc
ggagctcttggagagcctggaaagcaaggccctggtggtccaaacggtgagcgtggacct
cccggacccatgggaccccctggcctggccggagcccctggagagtctggacgtgaggga
acccctggtaacgagggcgcagctggtcgtgatggagcccctggacccaagggagaccgt
ggagagagtggccctgccggagcctctggtgcccctggtcctcctggcgcccctggacct
gtcggccctgctggaaagactggtgaccgtggagagactggacctgctggccctgccggc
gctgctggccctgctggacctcgtggccctgctggggctactggacttcgtggtgacaag
ggagaggctggagaggctggagagagaggcatgaagggacacagaggattcactggcatg
cagggacctcccggacctgctggaccttctggagagtctggacccgctggtgctgctgga
cccgctggacctagaggtccttcaggagctgctggttctgctggtaaggatggtatgagc
ggtctgcctggacccactggacctcctggacctcgtggacgttctggagagatgggacct
gctggtcctcctggacctcctggacctcctggagcacctggtgcccctggtggtggattt
gaccttggcttcatggtccagcctcaggagaaggctcctgatcccttccgcatgtaccgt
gctgatgatgctaacgttctccgtgaccgtgatctggaggttgatagcaccctgaagagc
ctgagccagcagattgagcagatccgcagccctgacggaacccgcaagaacccagcaaga
acctgcagggacctcaagatgtgccatcctgactggaagagcggtgagtactggattgac
cctgatcagggctgcactcaggacgccatcaaggtctactgcaacatggagaccggcgag
acctgcatatccccaactcagcgtgaggttgcccagaagaactggtacatcagcaagaac
atcaaggagaagaagcacgtctggttcggagaggctatgaatgacggcttccagttcgag
tatggcagtgagggctctctgccagaggatgtcaacatccagatgaccttcctgcgtctc
atgtccactgaggcatcccagaacattacctaccactgcaagaacagcgtcgcctacatg
gatgctgccgctggcaacctcaagaaggccctcctcctccagggctccaacgagattgag
atcagagccgagggcaacagccgcttcacctacagcgtcctcgaggatggatgcacgtca
cacaccggtacatggggcaagacagtcattgactacaagacatcgaaaacatctcgcctg
cccatcattgacatcgctcctatggacgttggtgctccagaccaagagtttggctttgaa
gttggacctgtctgtttcttgtaa
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integrated database retrieval system
