Maylandia zebra (zebra mbuna): 101476928
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Entry
101476928 CDS
T02814
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03030
DNA replication
mze03410
Base excision repair
mze03420
Nucleotide excision repair
mze03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101476928 (rfc1)
03410 Base excision repair
101476928 (rfc1)
03420 Nucleotide excision repair
101476928 (rfc1)
03430 Mismatch repair
101476928 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mze03032
]
101476928 (rfc1)
03400 DNA repair and recombination proteins [BR:
mze03400
]
101476928 (rfc1)
DNA replication proteins [BR:
mze03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
101476928 (rfc1)
DNA repair and recombination proteins [BR:
mze03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
101476928 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_30
AAA_5
RuvB_N
BRCT_2
Rad17
AAA_14
AAA_17
AAA_33
AAA_18
AAA_16
nSTAND3
AAA_7
RNA_helicase
AAA_19
NTPase_1
Motif
Other DBs
NCBI-GeneID:
101476928
NCBI-ProteinID:
XP_004564356
UniProt:
A0A3P9DCB9
LinkDB
All DBs
Position
LG6:20523611..20533050
Genome browser
AA seq
1161 aa
AA seq
DB search
MDIRRFFAPTSAKPAVQKPAPNGNDKQEKKKKNSSSTDEEVKKKKKEANKVKSKKTEEQR
KDGEKKRKKHAVIASDSDEEEPVRKSKSPKEKAKTNKKDPVQYVSETDSDSDNFQSLKKT
SKSKQNGAAKTTKADAKQSGKSPVKPSSTQGKTTPKSPPVPSTPKSAPPPQSKQTPTSVL
DYFGSASVQRSDKKLVASTKRKAPTLTDDLISDEEIARQLQMEEDMELEKQVHEDEEFAR
TLAMLDEEPKAKKARKGSDEKQVLTTSPKKKATDAAAPGSSSKTSVSEDVVSPSPKKTTA
PVKASSKLAMMKKKDDDKNEGVKSKTPTKMKISPKKEPHASSISEKTFTPKTGTTPTALK
TSPKKPESTSTSPDDQEKKKANSSAYRNFLNRDGPRALGSKEIPKGAENCLEGCVFVLTG
VLESMEREDAKSLIERYGGKVTGNVSKKTTYLIQGRDSGASKLEKAESFGTQILDEDGLL
ELIGTKPGKKSKYEIAAEAESKTTKTKTPPSQASKSTPKAQKISPSKGNSRSPHTPSPSK
TGQAQGRGTKTRDGGTPPGRGSGQTARRELGLSSATSSSSSVPEQSSPSPTEEGGSLLWV
DKYRPRSLKAVIGQQGDQSCANKLLRWLQNWYKNHGSGKPAAARFGKFGGKDDGSGFKAA
LLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNSLKEVVAESLNNTSIENFYKGTS
QTVSSKHVLIMDEVDGMAGNEDRGGIQEMIGLIKNSKIPIICMCNDRNHQKIRSLANYCF
DLRFQRPRVEQIKGAMMSIAFKEGIRIPPPALNEIILASNQDVRQVIHNLSMWSAKDKVM
TYDQCKSDAASARKDMKLGPFDVCRKVFASGEETARMSLIDKSDLFFHDYSLAPLFVQEN
YLHVRPAAAGGNLKSHLVLLSKTADSICDGDLVDRRIRSGQNWSLLPTQAIYASVLPGEL
MRGYMNQFPIFPSWLGKNSSTNKHSRIVQELSSHMGLKTLSSKQAVNLDYLHYLRQAILN
PLQKHGAEGAAEAVQLLDDYQLIKEDVDSIMEISVWGGQPDPYSKLDSKVKAAFTRTYNK
EVHLTPYSLQVVKKGRRGGGGDFEGGEEISQEDPESEDEGERLKADAMIKHKKAKPTKES
NKEKKEDSGKGKGKGKGKAKK
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttgcaccgacgtcggctaagcctgcggtgcagaaacctgcc
ccgaacggaaatgacaaacaggagaagaagaagaagaattcctcgtcaacggacgaggag
gtgaaaaagaagaagaaagaggccaacaaggtcaaaagcaaaaaaactgaggagcaacgc
aaggatggggagaaaaaacgaaagaagcacgcagtcatagcctcggactcagatgaggag
gagccagtgaggaagtcgaaatcccccaaagagaaagcgaagacgaacaaaaaagatccc
gtgcagtacgtctctgaaacagactcagacagcgacaacttccagtccttgaagaaaact
tccaaatccaaacagaacggcgccgcaaaaacgacaaaagcggacgccaaacagtcgggg
aagtctcccgtcaagccatcctccacccagggaaaaaccacaccaaaatctcctcctgtg
ccttccaccccaaagtcagctccgccccctcagtccaaacaaacccccacatcagtactc
gattactttggcagcgcgagtgttcagcgctcggacaagaagctggtagccagcaccaaa
cgaaaggctccgactctcacagacgacctgataagcgatgaggaaatcgccaggcagctg
cagatggaagaggacatggagctggagaaacaggtccacgaggatgaggagtttgccaga
acgctggccatgctggatgaagagccaaaagcgaagaaggctcgcaaaggctctgatgaa
aaacaagtcttgaccacgagccccaaaaagaaagccacagacgctgccgcccctgggagc
agctcgaagaccagcgtgtctgaagatgttgttagtccgtctcccaaaaagaccacagct
cctgtaaaagccagctccaaactggccatgatgaagaaaaaggatgatgacaagaacgaa
ggggtaaagagcaaaacccctactaagatgaaaatttctcccaaaaaggagccccacgct
tcatctatctcagagaagacgttcacccccaaaactggaaccacgcccaccgcacttaag
acttctcccaagaaaccggagagcacgagcacaagccctgacgaccaagagaagaagaag
gccaactcttcagcttacaggaacttcctgaacagagatggaccacgagctctgggctca
aaggaaatcccgaagggagcagaaaactgtttggagggctgcgtgtttgtcctgaccggc
gtccttgagtccatggagagagaagacgccaaatctctcatcgagcgctacggaggcaag
gtgacgggcaacgtcagcaagaagaccacctacctgattcagggccgagacagcggtgca
tcgaagctggagaaggcggagagcttcggcacccagatcctcgacgaagacggtctgttg
gagctgatcggaaccaaaccaggaaagaagtccaagtatgagatcgctgcggaagctgag
agcaaaaccacaaagaccaagacgcctccaagccaggcttcaaagagcaccccgaaggcc
cagaagatctctccctctaagggtaattccagatcacctcacaccccgagcccttcaaag
acgggacaggcacaaggccgcggtaccaagaccagagacggtgggactccacccgggaga
ggctcgggtcaaactgcgcgaagggagctgggcctttcctctgctacctcttcttcttct
tctgtcccagaacaatcatctccatcacccacagaagagggtggcagcctgctgtgggtg
gacaagtaccgtccacgctctctgaaggctgtgattggccagcagggggaccagagctgt
gcaaacaagctgctgcgctggctgcagaactggtacaaaaaccacggcagcggcaaacca
gcagcggctcggtttggtaagtttggagggaaagacgatggctcaggattcaaagccgct
ctgctctccggcccgccaggggtgggaaagaccaccacggctgccctggtctgcgaggag
ctgggcttcagttatgtggagatgaacgccagctgcactcgcagcaaaaacagcctgaag
gaggtcgtcgccgagtcgctgaacaacaccagcatagagaacttctacaaaggcacgtca
cagacagtgagcagtaaacacgtgctgatcatggacgaggtcgacggcatggctggtaac
gaggaccgcggaggaattcaggaaatgatcggccttattaaaaattcaaagatccccatc
atctgcatgtgcaacgatcggaaccaccagaagattagatctttggccaactactgcttc
gatctccgcttccagagaccgcgagtggaacaaatcaagggagccatgatgtccattgct
ttcaaggagggaatcaggatcccgcccccagctcttaacgaaatcattttagcctccaat
caggatgtccgacaggtgatccacaatctcagcatgtggtcagccaaggacaaggtgatg
acgtacgaccagtgcaagtccgacgcagccagcgcacgcaaggacatgaagctcgggccg
tttgacgtctgcaggaaggtgtttgcctcgggggaggagacggcccgcatgagcctcatc
gacaagtcggacctctttttccacgactactcgctggcgccgctgttcgtccaggagaac
tacctgcacgtgcgcccagctgctgcaggtggcaacctgaagtcccacctggtgttgctc
agtaagacggctgactccatctgtgatggcgatctggtggatagacggatccgctcagga
caaaactggtcactgctacccacccaggccatttatgccagtgtgttaccaggcgagctc
atgagaggctacatgaatcaattcccgatcttccccagctggctcggcaagaactcctcg
accaataaacactcacgcatcgtgcaggagctgtcctcgcacatgggtttaaagacactg
agcagcaaacaggcggtcaacctggattacctgcactacctgcgacaggcgattctaaat
ccactccagaagcacggagcagagggcgctgccgaagccgtgcagctgctggacgactat
cagctcatcaaggaggacgtggacagcatcatggagatcagcgtctggggaggacagccc
gacccctactccaaactggactccaaggtaaaggccgcctttacacggacatacaataaa
gaggtccacctaacaccatactccctgcaagtggtgaagaaaggccgccgtggtggggga
ggagactttgagggaggggaggaaataagccaggaagatccggagtctgaagacgaagga
gagaggctcaaagcagacgctatgattaagcacaagaaggccaaacccaccaaggagtca
aacaaggagaagaaggaggattctggaaagggcaaaggcaagggcaaaggcaaggctaag
aaatga
DBGET
integrated database retrieval system
