Maylandia zebra (zebra mbuna): 101476952
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Entry
101476952 CDS
T02814
Symbol
pdzrn3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
mze
Maylandia zebra (zebra mbuna)
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mze04121
]
101476952 (pdzrn3)
Enzymes [BR:
mze01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101476952 (pdzrn3)
Ubiquitin system [BR:
mze04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
101476952 (pdzrn3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-RING_5
Sina_ZnF
zf-TRAF
zf-C3HC4_4
Prok-RING_4
PDZ_Tricorn
U-box
zf-rbx1
TRAF3_RING
zf-RING_6
RING_XB3-XBAT31
IBR_1
TRAF2_zf
Motif
Other DBs
NCBI-GeneID:
101476952
NCBI-ProteinID:
XP_004567467
UniProt:
A0A3P9BNA3
LinkDB
All DBs
Position
LG5:6558824..6657918
Genome browser
AA seq
1044 aa
AA seq
DB search
MGFELDRFKGTVDPDFKCNLCNKVLEDPLTTPCGHVFCSGCVLPWVVQQSSCPVKCQRIS
TKELNHVLPLKNLILKLEIKCDNHTRGCDAVVKLQHLAEHAEMCDYSPAKCRNRGCSEVL
NLRDVDAHMRETCDYRPVEVCESGCGLMLTQKEQKSNSHCCLRALKAHNSALQCRMIILD
REFKKQTIEANKREKALLAQLSAVHSELQMTALKYQKKFTEYSERIDSLTKTVAFSCKEG
ETKSVTVVLLREGGSLGFNIIGGRPCVDDNDSTSNEGIFVSKIVEKGPADKEGGLQIHDR
IIEVNGKDLSKATHDQAVEAFRTAKEPIVVQVLRRAPYPKVANPAVDTQVTDISTQTDIT
LQHIMALTNLPPSSPPISELEEYLLPEEHPPGHVYFDPDFLEGIQQDIEREELEYEEVDL
YRDNIQDKLGLTICYRTDDEDEAGIYISEIDPNSIAAKDGRIREGDKIIQINGVEIQNRE
DAVALLTSESNQNISLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTASM
LQQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRNDESSEQENLGDDQTTASNTLGS
CRKLTYSQDTLGSTDLPFSSESFMSVDYADADFLGIPVDECERFRELLELKCQMRSSGAQ
GLYGQGGGAVGQDQEGVDKELEMLNEELRTIELECLNIVRAHKMQQLREQCRESWMLHNS
GFRNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRRVAE
NQAGPSGSSGRMLKPLLSPVQEACSPSRSRSSSKDPDGALQAEGKERKPGESSKSGRGFS
QPHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCRDPITPSDLEPKMEWK
VKIRSDGTRYITKRPVRDKLLRERALRIHEERSGMTTDDDAISELKMGRYWSKEERKQHA
VRAKEQRQRREFMKQSRADCLKEQATLEDKKEPNIIELSHKKMMKKRNKKIFDNWMTIQE
LLTHGTKSPDGTRVYNSLLSVTTV
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagttggaccgcttcaaggggactgtggacccggatttcaaatgcaacttg
tgcaataaagtcctggaggacccgctgacgactccgtgcggtcacgtcttttgctctggc
tgcgtgctgccctgggtcgtccagcagagcagctgcccggtcaaatgtcagcggatctcc
accaaagagctgaaccacgtcctgcctctaaagaacctcatcctgaagctggagattaaa
tgcgataaccatacgaggggctgcgatgccgtggtgaagctgcagcatctggccgagcac
gccgagatgtgcgactactccccggcgaagtgcaggaacagaggatgcagcgaggtgctc
aacctgcgggacgtggatgctcacatgcgggagacgtgcgactacagaccggtggaggtt
tgcgagagcggctgcgggctgatgctcacccaaaaggagcagaaatcaaatagccactgc
tgcctgagagccctgaaggcgcacaacagcgcgctgcagtgcagaatgatcatcctggat
agggagttcaagaagcagaccatagaagcaaacaagagggagaaggctctcctggcacaa
ctttccgccgtgcacagcgagctgcagatgacagcgctcaagtatcagaagaaattcaca
gaatacagcgagaggatcgactccctcaccaagactgtggctttctcctgcaaggaaggc
gagactaaaagcgtgaccgttgtccttcttcgtgagggcggctctctgggttttaacatc
ataggaggaaggccatgcgtggacgacaacgacagcacttcgaatgaaggaatctttgtg
tccaagatcgtggagaaaggtccagcagacaaagagggaggccttcagatccacgacaga
ataatagaggtcaatggaaaggacctctcaaaggccacacacgaccaggcggtggaggcc
ttccgcaccgccaaggagcccatcgtggtccaggttctgcgtcgggccccttaccccaaa
gtggccaaccctgccgttgacacccaagtcacagacatcagcacccagacggacatcacc
ctccagcacatcatggccctcaccaatctgcccccctcttcacccccaatctcagagctg
gaggagtatctgcttccagaggagcatcctcctgggcacgtgtactttgaccctgatttc
cttgagggtatacagcaggacatagagcgggaggagctggaatatgaggaggtggatttg
tacagagacaacattcaagacaagctcggcctgactatctgttacaggactgacgatgag
gatgaggctgggatctacattagtgagattgatccaaacagcattgcagcaaaagatggc
agaattagagaaggtgacaaaatcatacagatcaacggtgttgagatccaaaatcgagag
gatgccgtggcactgctaaccagtgagagcaaccagaacatctccctgctggtggccagg
ccagagatccagctggatgagggctggatggatgatgacaggaacgacttcctggatgac
ctccacatggatatgctggagcagcagcaccatcaggccatgcagttcactgccagcatg
ctgcagcagaagaagcacgaggaggatgggggcaccacagatacagccacgctgctctct
aaccatcacgagaaggacagcggcgtcggccgcacggacgagagcacgcgaaacgacgag
agctctgagcaggagaacctcggcgatgaccagaccacggcctccaacacgctgggcagc
tgcagaaagctgacctacagccaggacacgctcggtagcaccgacctgcccttcagcagc
gagtcgttcatgtcggtcgactacgccgacgccgacttcctgggcattccggttgacgag
tgcgagcgcttcagggaactcctggagctcaagtgccagatgaggagcagtggagcccag
ggcctctatgggcagggcggtggagcggtgggtcaggaccaggagggtgtggacaaggag
cttgagatgctcaatgaagagctgcgcaccatagagctggagtgcctgaacatcgtccgc
gcccacaagatgcagcagctgagggagcagtgccgtgaatcctggatgctgcacaacagc
ggcttccgcaactataacactagcatagatgctcgccgccacgagctgtcagacatcacg
gagctgccagagaagtctgacaaggacagctccagtgcctataacactggtgagagctgc
cgcagcacccctctgactctggaactgtctccagataattcgctccgtagagtagcagaa
aaccaagctgggccgtcgggctccagcggcaggatgctgaagcccctcctgtctcctgtg
caggaagcttgcagcccgagccggagcagaagctcatccaaggatccagatggagcactg
caggcagagggcaaagagagaaagcccggagagtctagtaagagcgggcgaggcttctct
cagccgcactcaccttacaagcatgctcacatccccgcccatgcccagcactaccagagc
tacatgcagctgatccagcagaagtcagccgtagagtacgctcagagccagatgagcctg
gtcagcatgtgtcgggatcccattacccccagcgacctggagcctaagatggagtggaag
gtgaagatccgcagcgacggcacacgttacatcaccaagaggcccgtccgggacaagctg
ctgagggaacgcgccctccggattcacgaggagcgcagcggtatgaccacagatgacgac
gccataagcgagctgaagatgggccgctactggagcaaggaagagaggaagcagcacgcg
gtgcgtgccaaggagcagaggcagcgccgcgagttcatgaagcagagccgagccgactgt
ctgaaggagcaggccaccctggaggacaaaaaggagccgaacatcatcgaactcagccac
aaaaagatgatgaaaaagaggaataagaaaatatttgacaactggatgaccattcaagaa
cttctcacccatggtaccaagtcaccagatggcacgagggtgtacaactccctcctgtct
gtgactacggtctaa
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integrated database retrieval system
