Maylandia zebra (zebra mbuna): 101477012
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Entry
101477012 CDS
T02814
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101477012 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mze03021
]
101477012 (pcf11)
03019 Messenger RNA biogenesis [BR:
mze03019
]
101477012 (pcf11)
Transcription machinery [BR:
mze03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101477012 (pcf11)
Messenger RNA biogenesis [BR:
mze03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
101477012 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
CID
Pcf11_helical
CFIA_Pcf11
Motif
Other DBs
NCBI-GeneID:
101477012
NCBI-ProteinID:
XP_004556948
LinkDB
All DBs
Position
Unknown
AA seq
1590 aa
AA seq
DB search
MDCLLISGYGFGKTRLGLAECLSSKMDDSAAREDACREYQSSLEDLTFNSKPHINMLTIL
AEENINFAKDIVEIIEAQISKAPPSEKLPVLYLVDSIVKNVGGEYLAVFAKNLIPSFICV
FEKVDENTRKSLFKLRSTWDDVFPPKKLYALDVKVNSVDPAWPIKLPPPTPNSSIHVNPK
FLKQPEESSSSPRPTPAQPPPTAPPAPQPVPAAISQSSLTQEQLIRQQLLAKQKQLLELQ
QKKIELELEQTKAQLVSGFTLPAATAISTSSAMSPAPKLISQPAPVVRPWVPPQSDSKSS
VRDPRLNRPPTGPLPKDQPATTKRETPPTTGSHTLALEKARMQKKDAPQEKPKSKSPSPM
AKSGPSKTKAAEAALQSGTKKDPRLRKRTQDKVGEGKDGEQKEKKRCGDEEREDAARGAE
PQRFKGKLVNGSVAKHERDKAADKTAGNARTHARKRTRSRSRSRSPASSPKRKDRRSPKG
RARSSSSSPSPLHKAGKPRRLDLLHSKPGREDRPTPKSQSESRRSKRPGEERHSETRDSH
SPRSHDGGCKEMKDAPHRWRSGWEESKHMKLSGDVHAKPTPQRHKPYSTPNRPSTPRTPK
HRLSVDANLQIPDVLNSASKKDLLRRASKRMESGEISREEFLNMAHQIKQLYQYQEEIQL
RKDSWDESDFPVKKQPPLLSTPSSQPHPHEGMDPAELSYYEHKSKLRKTQVNHRPAGEEW
EGEETPEITDKPGHSEKMGGGQSGGHLPPHKYNRGPRDRPGERRSKECEEHRAPLAPMVE
EYNHGKEFPALKPGLRFTKRPDHRETKRSEVRFWSGGVSGCRSGILQQDEREWTSPLTER
QHYNDREEQKSSYNVPRRYGPPADARRPEVPPPSGTVVHRNSPSPAGLDATATRFERERL
SPLQKDSADMSPIARFESPNSEHSDDGPLDAPPPHASTKSILKAPLPRGGPQSSVRQHGG
SPGHTPPHDGGHPPARYNGPGHMGSSRPHAPGWYEGGGGPGRFDDSLQCEGPHHPAPSRF
EGAGPTHHTMAERVDGPGHISHGPMRGGERIGRFEGPPQGPGRFGAPVALQTRFEVPAPG
HSEGPLQRFEAPRHLNNMGPGPGSAPMGFQQRPARFEGPTRFDGPGHFEGPGQPGPRYDV
PHQGGPPHFEHFPGQGHLRFEPQHNLQPLMRQMGPPMYETPMAPQQNFTMPPQRFPDPIN
PQFPAAPAAFPAQQNMQQAGNFHVQPFSQPGPAPFYNPGAPAVGLQQPVSVMGAMAQPFL
PQTAVPFGQQNPQVVPPENHFGQVDVNDLLSKLLSTGIIKPSQPDAAPASSSESSSVPPP
APPPEEEEEEEQEVEGEGEGEGEDDVLDLTSFSIDDMKQRYESVVTKLYSGNQCCLCSMR
FTAAQTDMYADHLDWHFRQNHAGKVASKKVTHRRWYYSLTDWIEFEEIADLEERAKSQFF
EKENEEEVQKSQAAAKEKEFQIVRATKDQVGESCEICQEPFETYWVEEEEDWFLKNAVKV
DDKNFHPSCFEDYKNTSSYVDVTPSPSKLLTDHPLGAFVKTEEKQEEVTSCAVAAAAAAA
ATSVKQEVQNESGEPPEVKTEAGEEAAAAL
NT seq
4773 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctgctgatcagtggttatggtttcggtaagactcgcttaggtttggccgag
tgtctcagctcaaagatggacgacagcgcggcgagggaagacgcctgccgggagtaccag
tcctccctcgaagacctgacgtttaacagcaagccgcacatcaacatgctgaccatcctg
gccgaggaaaacatcaacttcgccaaggatatcgtggaaattattgaagcacaaataagc
aaggccccacccagcgagaagcttccagttttgtacttagtggattccatagtgaagaat
gttggaggagaataccttgcagtgtttgctaaaaacctaatcccttcatttatatgtgtc
tttgaaaaggtggacgaaaacactagaaagtccctgttcaagctgcgctccacctgggac
gacgtgttcccgcccaagaagctgtacgcgcttgacgtgaaggtcaactctgtggaccca
gcgtggcccatcaagctgccgccgcccacccccaactccagcatccacgtcaaccccaag
ttcctcaaacagcctgaggagtcttcatcctctcccaggccaaccccggcccagccaccg
cccacggccccacctgcccctcagccggtccctgccgccatcagtcagtccagcctgaca
caggagcagctaatccggcagcagctgctggccaaacagaagcagctcctggagctccag
cagaagaagatcgaactggagctggagcagaccaaagctcagctggtcagcggcttcaca
ttaccagcagcgacggcgatctccacttcatcagcaatgagcccggcgcccaagctcatc
agccaacccgctcccgtggtccgaccctgggtaccccctcagagcgattcaaagtcgtcc
gtcagagacccccggctgaaccgcccgcccactggccccctacctaaagaccagcctgcc
acaacaaaaagagagactccacccaccacaggaagtcacactctcgctctggagaaagcc
aggatgcagaagaaagacgctccacaggagaaacccaaatccaaatcgccgtctccaatg
gcgaagagtgggccgagtaaaaccaaagcagcggaggcagcgcttcagagcggcacgaag
aaagacccgcggctgaggaaacgcacgcaggacaaggtgggcgagggcaaggacggtgag
cagaaggagaagaagcgatgtggtgatgaggagcgggaggatgctgcacggggggcggag
cctcagaggttcaaaggcaaactggtgaatggttcggtcgccaaacacgagcgtgacaag
gctgctgataagaccgctggcaacgccagaacgcatgcaaggaagcgcactcgctcgcgg
tctaggtcgcgatcccccgccagctccccaaagaggaaggacagacgctcgccaaagggc
agagcccgcagcagctcgtcctcgccatcacctttgcacaaagctggaaaaccacggagg
ctcgacctgctgcacagcaagcccggtcgggaggaccgtcccacccccaaaagccaatct
gagagcagaaggtccaagagacccggggaggaacgccactccgagaccagagactctcac
tcgccacgcagccacgacggaggctgcaaggagatgaaggacgcccctcaccgctggagg
agcggctgggaggagagtaaacacatgaagctgtcgggcgacgtgcacgccaagcccacg
cctcagagacacaaaccgtacagcacgccaaaccgccccagcaccccccgaaccccgaag
caccggctcagcgtcgacgccaacctgcagatccccgatgtcctgaactccgcctccaag
aaggacctgctgaggagggcgagcaagcgcatggagagtggcgagatctcccgcgaggag
ttcctcaatatggctcaccagatcaaacagctgtaccagtatcaggaggagatccagctg
cgcaaagacagctgggacgaatcagacttccccgtcaagaagcagccgccactgctgagc
actccctcatctcagccccacccccacgaaggcatggacccggcggagctgtcatactac
gagcacaagtcgaagctgaggaagactcaggtcaatcaccgacctgccggagaggagtgg
gagggggaggagactcccgagatcaccgacaaaccagggcacagcgagaagatgggtggc
ggtcagagcggcggacatctgccgccacataaatacaaccgaggcccgcgagacaggcca
ggcgagaggcggagcaaagagtgcgaggagcatcgggcgccgctcgcccccatggttgag
gagtacaaccacggcaaagagtttccagcgctgaagccaggtcttcgcttcacgaagaga
cccgaccacagagagacaaagaggtcagaggtcaggttctggagcggcggggtgtcaggg
tgtcgatcagggatacttcagcaggatgagagagagtggacctcgccgctgacagagcgg
cagcattataacgaccgcgaggagcaaaagagcagctacaatgtcccacggcggtacggc
ccacctgctgacgcccgcaggccggaggtgccccctccttcgggcacagtggtccacagg
aactccccgagcccagctggcctggacgccacggcgacacgcttcgagcgcgaacggcta
tcaccgttacagaaagactctgctgacatgagcccgatagcgcgctttgagagcccaaac
agcgagcactcggacgacgggccccttgatgccccgccgcctcatgcttcaaccaaatcc
atcctgaaggcgccactcccccgtggagggccgcaatcttcggtccgacagcacggcggg
tcacccggacacacaccacctcacgacgggggacacccccctgcacgctacaatggcccc
ggtcatatgggctcttctaggcctcacgccccaggatggtatgaaggcggcggtggccct
gggcggttcgatgactcactgcagtgtgaggggcctcaccacccagcccccagcaggttc
gagggtgccggaccaactcatcacacaatggcggagagggtggacggtcccggacacatc
agtcatggcccgatgagaggcggagaacgaatagggcggtttgagggcccccctcagggg
cccggcaggttcggggctcctgtcgcactacagacacgatttgaggtgccggcacccggc
cactcagagggcccgctgcagcgcttcgaagcaccacgtcacttaaacaacatgggtccc
ggccctggatccgcccccatgggcttccagcagcggccagcacgcttcgagggccccacg
aggtttgatggccctggacacttcgaggggccgggccaaccgggcccccggtatgacgtg
ccacatcagggaggccccccgcacttcgagcacttccccgggcagggccacctgcgcttc
gaaccccaacacaacctgcagcccctcatgagacagatgggcccgcccatgtacgaaacc
cccatggccccccagcagaacttcaccatgcccccccagcgtttcccggaccccatcaat
cctcagttccctgcagcaccagcggcgttcccggcgcaacagaacatgcagcaagccgga
aacttccatgtgcagccgttcagtcagccaggacccgcccccttctacaaccccggggca
cccgctgttggcttacagcagccggtgagcgtgatgggagccatggcccagcccttccta
cctcagaccgccgtgcctttcggacagcagaatccgcaggttgtccctccggagaaccac
ttcggtcaggtggacgtgaacgacctgctgtccaaactcctctccaccggcatcatcaaa
ccctcgcagcccgacgccgcgcccgcctccagcagcgaatcgtcttctgtacctccgccg
gcaccgccaccagaggaggaggaagaggaggagcaggaggtggagggtgagggcgagggt
gagggcgaggacgacgtgctggacctcaccagcttcagcatcgacgatatgaaacagcgc
tacgagagcgtggtgacgaagctgtactcagggaaccagtgctgcctgtgcagcatgcgc
ttcaccgccgcccagaccgacatgtacgctgaccacctggactggcacttcaggcagaac
cacgccggcaaagtggcgagcaagaaggtcacgcaccgccgctggtactacagcctcacg
gactggatcgagttcgaggagatcgccgacctggaggagcgcgccaagagccagttcttc
gagaaggagaacgaggaggaggtgcagaagagccaggcggctgccaaggagaaggagttc
cagatcgtgagagccaccaaggaccaggtgggagagagctgtgagatctgtcaggagccc
tttgagacgtactgggtggaggaggaggaggactggttcctgaagaacgccgtcaaggtc
gatgacaagaacttccacccctcctgcttcgaggattataagaacacatcgtcgtatgtc
gacgtcacgccgtcgcccagtaagctgctgaccgaccacccgctgggcgccttcgtgaag
acggaagaaaagcaggaggaggtcacttcctgtgctgttgctgccgctgctgctgccgcc
gccacctcagtgaaacaggaggtgcagaatgagagcggggagcctcctgaagtgaagacg
gaggcaggtgaggaggcggcggcggcgttgtga
DBGET
integrated database retrieval system
