Maylandia zebra (zebra mbuna): 101479151
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Entry
101479151 CDS
T02814
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
mze
Maylandia zebra (zebra mbuna)
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mze03009
]
101479151 (ighmbp2)
03012 Translation factors [BR:
mze03012
]
101479151 (ighmbp2)
Enzymes [BR:
mze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101479151 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
101479151 (ighmbp2)
Ribosome biogenesis [BR:
mze03009
]
Eukaryotic type
Other ribosome biogenesis factors
101479151 (ighmbp2)
Translation factors [BR:
mze03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
101479151 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
DEAD
Helicase_RecD
ResIII
nSTAND3
AAA_16
UvrD-helicase
AAA_22
IstB_IS21
Flavi_DEAD
PhoH
SLFN-g3_helicase
ABC_tran
Zot
AAA_25
AAA
HEM4
NPHP3_N
AAA_31
Motif
Other DBs
NCBI-GeneID:
101479151
NCBI-ProteinID:
XP_004553091
UniProt:
A0A3P9ATK0
LinkDB
All DBs
Position
LG7:complement(13971358..13979966)
Genome browser
AA seq
983 aa
AA seq
DB search
MALEKFVSKTLELLQEEREAEIEETRVWQENISLKDLQNKGVCLLKLQIGSQSTGLYGRT
VVILEPRKHLGFSSLPSNSFGPGDIVGLYDTTGCTAASQISTGIVTRVGQASVSVAFDDL
KDGHSLDSDALYNLLKLANDVTYKRMKRALNTLNGYNNGPASNLISVLFGDTKPTSQSQP
NKVEFFNSNLDDSQREAVSFALSQRELAVIHGPPGTGKTTTVVEIILQAVKQGQKILCCA
PSNVAVDNLVERLAQGKAKVLRLGHPARLLESIQKHSLDAILAQSDNANIIAEIRKDIDK
AFTGMKKEKGERGNMKREIGELRKELKSREAAAIAQILKSADVVLSTNTGACDDGPLKFL
PAEHFDWVVIDECAQALESSCWIALLRARKCILAGDYKQLPPTIKSQMAASKGLSLSLME
RLIQMYGDSVVRMLTVQYRMNSAIMQWASKEMYHGRLTAHSSVEGHLLKDLAGVACVEET
STPLLLIDTAGCGLSEMEVADEQSKGNTGEVDIVDLHIKALTEAGVKAKDIAVIAPYNLQ
VDLLRQKLSAKHPELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVTRA
RRHIAVVCDTQTVQNHGFLKSLIDHMTEFGEVRTAFEYIQDIVPQNYTRDHKDAKTASSS
TSTSTKHKVKDQPSSKAKPGQKKSAGSSSKENAAGSEKQTKSSTSAEQEQSKGRRAEIRE
QVERFMKDLNQSELQFPSSFNSHDRLLVHEIAEELGLIHESKGEGSERCITVSRPPVSKP
AKEEARAATEEEEETIPDSKSEPSSQPPLDLKSLHLERMKREQKKREENAQQKKQQNNIH
PAQGHSSKKAKGKNRTKAGACDIAAASAPDDDFDTLISSVMKADSVCSFVKCKASVLTLG
QLCLFCNRQYCLSHHIPEVHGCGDKAKSHARMRISKEGVLYAGSGKKDKSMDHNKKAYLQ
RKLDSKLKDMASQRKPKNKEKDG
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atggccttggaaaagtttgtgtcaaagacactcgagcttctgcaggaggagcgggaggct
gagatagaggagaccagggtatggcaggagaacatttctctcaaggatcttcaaaacaaa
ggtgtttgcctgctgaaactgcagataggaagtcagtccacaggcctctacggccgcaca
gtcgtcatcttggagccaagaaagcatcttgggttctcatctctgccaagcaacagcttc
ggacctggtgatatagttggcttgtatgacactactggatgcactgcagcctcacagatc
agtactgggattgtgacaagggtcggccaagcatctgtaagtgtggcctttgatgattta
aaggatggccacagtttagattcagatgcactttacaaccttttaaagttggcaaacgac
gtcacttacaaacgaatgaaacgtgctttgaatacattaaatggatacaacaatggacca
gcttccaatttaataagtgtcctctttggagacacaaaacctacttctcagtcacaacca
aataaggttgaattctttaactcaaacttggatgactcccaaagagaagctgtatccttc
gctctgtcacagagagagcttgcagtgattcatgggcctccgggcactgggaagaccacc
actgtggtggaaatcatcctgcaagctgtcaaacaggggcaaaagatcctgtgctgtgct
ccttcaaatgtggcggtggataatttagtggagaggttagcccagggcaaagccaaggtc
ctgaggctgggtcacccagccaggctactggagtccatacagaaacattcactggatgcc
atcctggctcagagtgacaacgcaaacatcatcgctgagatccggaaggacattgataaa
gcatttacgggaatgaaaaaggagaaaggagaacgggggaacatgaaacgagaaatagga
gagctgagaaaagagctgaaaagcagagaggcagcagccatcgcccagatccttaaaagt
gctgacgttgtgttatcaaccaacacaggtgcctgcgatgacgggcctctgaagttcctg
ccagctgaacattttgactgggtggtgatagacgagtgtgctcaggcactggagagcagc
tgctggatcgccctgcttagagcgcgcaagtgcatcctggctggagactacaagcagtta
ccacctaccattaaatcacaaatggctgcatcaaaaggcttatctctgagtcttatggag
agacttatccagatgtacggggactcggtggttcgtatgctgacagttcagtaccgcatg
aacagtgccattatgcagtgggcctccaaggagatgtaccatggaagactgaccgctcac
agctctgtggagggacatttactgaaagatctagcaggagtcgcatgcgttgaagagacc
agcacgccgctgcttcttattgacacagcagggtgtggtctgagtgaaatggaggtcgca
gatgagcagtccaaaggcaacacaggtgaggtcgacatcgtcgatctgcacataaaagct
ctgactgaagctggagttaaagctaaagacatagctgttattgctccatacaatctacaa
gtcgatcttctacgtcaaaaactttctgcaaagcatccagagctcgagataaaatcagtg
gatggatttcagggcagggaaaaagaggctgtcgtgttgtcgttagttcgatccaacaga
aaaggtgaagttggatttctagcagaggacagaaggataaatgttgccgttacgcgtgca
agacgacacatcgctgtcgtgtgtgacactcaaaccgttcagaatcacggttttctgaaa
tccctgattgatcacatgactgagtttggtgaggtcagaacagcgttcgagtacattcaa
gacatcgtaccacaaaattacacccgtgaccacaaagatgcgaaaacagcctcttccagc
acctccacatctaccaaacacaaggtcaaggatcagccctccagtaaagcaaagccagga
cagaaaaaatctgctggtagcagcagcaaggaaaatgcagctggttcagagaagcaaaca
aagtctagcacatcagcagagcaagagcagagtaagggcagacgcgctgagatcagagag
caggtggaaaggtttatgaaggacttaaaccagagtgagctacagtttccgtcatcgttt
aactctcatgaccggctgctggtccatgagatcgctgaggagctgggcctcattcatgag
agcaaaggagagggaagtgagaggtgtatcactgtctccagacccccagtgtcaaaacca
gccaaagaggaagcacgagcagcaacggaagaggaagaggaaacgatcccagattcaaaa
agtgagccatcgtctcaaccccccttagacctgaaaagtttacatttagagaggatgaag
agggagcagaagaaaagggaagaaaacgctcaacaaaaaaagcaacagaacaacattcat
ccagctcaaggccactcatcaaaaaaagcaaaaggaaaaaatcgaaccaaggctggggcc
tgcgacattgctgctgcctctgctccagatgacgacttcgacacactcatcagtagtgtc
atgaaggccgacagtgtttgtagttttgtcaagtgcaaagcatctgtgctaacactcggg
cagctctgcctgttctgtaacaggcagtattgtctcagtcatcatataccagaggttcac
ggttgtggagataaagccaagtctcatgctcgaatgaggataagtaaagagggtgttctt
tatgctgggagtgggaagaaagacaaatctatggaccacaataagaaggcctatctgcaa
agaaaattggactctaagctaaaagacatggcgtcacagaggaagccaaaaaacaaagag
aaggatggttaa
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