Maylandia zebra (zebra mbuna): 101480828
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Entry
101480828 CDS
T02814
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze04382
Cornified envelope formation
mze04510
Focal adhesion
mze04512
ECM-receptor interaction
mze04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101480828
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101480828
09142 Cell motility
04820 Cytoskeleton in muscle cells
101480828
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
101480828
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mze04147
]
101480828
00536 Glycosaminoglycan binding proteins [BR:
mze00536
]
101480828
Exosome [BR:
mze04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101480828
Glycosaminoglycan binding proteins [BR:
mze00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101480828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101480828
NCBI-ProteinID:
XP_014264470
LinkDB
All DBs
Position
LG14:complement(36636141..36690299)
Genome browser
AA seq
1657 aa
AA seq
DB search
MLLTSCSDACGLNLLWCLLIVLKALPAALGGDLSEPCGGRDCSTCQCFPAKGARGAPGSL
GLRGPNGPMGFPGPQGPPGEKGQRGDEGPTGAAGLKGHMGSLGVPGFPGLDGVPGHPGPA
GGPGHPGLDGCNGTRGEKGKAGLLGEQGRDGELGFPGPKGYPGDQAVYFIRNPGVTGDAG
PSGHPGLWGEQGLSGSKGALGSPGPKGQDGVPGSPGSRGPPGERGRSLPGQKGDEGDQGL
QGPPGPFEYVDPPEDLYIKGDKGSRGVKGVCGIDGQLGLNGSPGMEGEKGILGLPGPRGL
PGQPGLRGNKGVKGIQGSSGLPGLIGRNGPKGERGDPGPPGNPREEDITYTGQVGDPGSP
GPHGLNGDRGRMGIPGPPGPPGRSIVGLPGVVGQKGVPGCKGVRGDPGQISTEKPTPGEP
GKPGRRGFRGHKGQQGVPGTYCLPGASGPRGDPGVLGPTGFQGSLGIKGSCGSCSCGLPL
VLRGAPGPKGDLGFPGFQGSSGPTGPRGEYGVPGDTGETGEQGRAGLPGVKGFKGQKGDL
TVEDIEGEKGNKGQRGPAGRQGFPGRRGQTGPSGVPGNPGFQGESFFSFPGERGLRGTTG
LKGYLGPPGPRGPDADGAVGERGLLGDPGPTGSCGPPGLKGVKGDPPPFRPIRPGAPGEK
GDPGSAGYTGSQGSPGFPGGIGSDGPKGDNGKDGLPGIPGKQGPQGVTGDYGDEGPEGFS
YDGDPGSPGLRGSAGLSGPTGDSAFGLPGSIGFPGTRGPQGPKGVPGDPGQHGLPGIGGL
HGCRGAKGQKGDDGAPGITGCSGPTSNRCDPGKPGTMGQSGFPGSIGAQGIFGDKGEIGS
VGSEGIGRKGSVGASGFPGVRGKPGCQGPPGLNGSSGLQGTGGPKGLTGPRGWEGVPGNP
GEPGVPGDPGMTGERGFNGRDGGQGIEGPKGQKGFQGPTGPPGPTNYIRIKGKTGDPGHP
STVGFTGPRGSKGMQGAAGKPGHPGCDGPPGIVGPPGPPGPCGKQGPAGLPGLKGFEGYC
GFPGSVGDPGDKGCSGKPGEPGPPGCKGPKGNKGESVGCPGPNGERGPRGDKGHLGPPGS
PGDPGGLGFTGAPGEKGSKGEKGHHGNIGPGGVIGPPGPRGQPGTPGIEGKSGGDGPPGH
EGYRGLKGPPGPLGLHGLDGLKGEKGATGTRGRGFPGVEGSLGPPGDKGPPGHQGLCGTS
QPGPPGYKGPVGTKGPPGKCGPPGKLGPDCKTPIKGPCGDPGCPGQDGEPGSLGEIGDPG
QNPPIRGDIGDNGNVGCQGPKGPRGCPGHIGTQGCTGYPGQKGMRGDSGLLGIPGPRGCK
GVPGHCGSPGLPGSPGDHGPKGEKGDTLDPELISPPKGPPGETGSTGQFGHPGLNGEQGP
CGPKGDKGDYGPQGCKGCDGAPGLKGDKGEPGLPGESGVVGQKGNRGPEGEKGSHGPTKE
LNLGLLVMHSQSANTPRCPGNMNTLWEGFSLLYLEGQERAHTQDLGQPGSCMRVFSTLPF
APCNKRTCSYASRNDKSYWLTTMEPVPREHVSGPSIQNYISRCVVCEAPSLPIAVHSQSR
QSVECPENWTELWDGYSFVMHTGAGDEGGGQPLTSSGSCLKAYKAQPFVECQGPRGTCHF
FANMYSFWLTTLTDPAMLTNDQEQRRSIAKCKVCMRL
NT seq
4974 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgacttcctgctctgatgcctgtggtctcaatctgctctggtgcctcctgatc
gtactcaaagccctgccagcagctctcgggggtgacctgtctgagccatgtggtgggcgg
gactgctccacctgtcagtgtttcccagccaagggagcaaggggtgctcctggttctctg
ggtctgcggggccctaatggacccatgggcttcccgggtcctcaggggcctccaggagag
aaaggccagagaggagatgaggggccaacaggagctgcaggcctgaaaggacatatggga
tctcttggtgttcctggttttccaggtttggatggagttccgggacacccgggacctgct
ggaggtccaggacatccaggtctggatggatgtaatggaactagaggagagaaagggaaa
gctggacttctgggagaacaaggacgtgacggagaactgggttttccaggaccgaaagga
tatccaggagatcaggcggtgtatttcatccgtaaccctggagtgactggagatgctggg
cccagtggacatcccggtctgtggggtgagcagggcctctcgggatcgaagggagcactg
ggttctccaggaccaaaaggccaagacggcgtacctggaagcccgggttctcgaggtcca
cccggggaaagaggtcgatctctgcctggacagaaaggagatgagggggatcagggtttg
cagggacctccggggccctttgagtatgttgaccctcccgaagacctctacatcaaagga
gacaaaggctcccggggggttaaaggagtctgtggaattgacggacagctgggtctgaat
gggtcacctgggatggaaggggagaaggggattttggggcttcctggaccaaggggactc
cctggacaacctggtctgcgtgggaacaaaggagttaagggaatccaaggaagctcagga
ctcccaggtctgattggacgaaatggtcctaagggcgaaaggggagatcccgggcctcca
ggcaacccccgggaggaagacatcacgtacaccggtcaagttggggatcccgggtcaccc
ggcccgcacggccttaatggagacagggggcggatgggaatacccggccccccaggaccg
cctggcagatcaatagttggactgccgggagttgtaggtcagaagggagttccaggatgc
aagggggtcagaggagatccaggtcagatctctacagagaaacccacacctggagaacct
ggaaaaccagggcgccgtggattcagaggacataaaggacagcaaggtgttccaggtacc
tactgtctccctggagcctcaggaccacgtggggacccaggtgtgctcggacccacgggg
tttcagggctcactgggaattaaaggtagttgtggcagctgttcttgtggccttcctctt
gtactaagaggtgcacctggccctaagggtgacttgggatttccaggcttccaaggatcc
tctggacccacaggtcctcggggagagtacggtgttcccggagacacaggagagactggt
gagcagggtcgggccggattgccgggtgtcaaaggctttaaaggacagaaaggagattta
acagtggaggatatcgaaggtgagaagggaaacaagggacagcggggccctgcaggcaga
caagggttcccaggaagaagaggacagactgggccctcaggggtccctggaaatcccggt
ttccagggggagagttttttcagcttccctggagaaaggggcctcagaggaactacaggg
ttaaagggatatttaggacctccaggtccccgaggaccagatgcagatggagctgtggga
gaacgtggactccttggggatccaggacctactggatcctgtggccccccggggttaaag
ggggttaaaggtgaccctccaccctttagacccataagaccaggtgcccctggagagaag
ggagaccctggaagtgcaggctacacaggttcccagggttctccaggttttcctggtggc
attgggtcagatggacctaaaggagacaatgggaaggatggacttcctggaatacctggg
aaacaaggacctcagggtgtcactggagattatggagatgaaggacctgaaggcttcagt
tatgatggagatccaggctctccgggacttcgaggctctgcaggtctcagcggaccaaca
ggagactctgcttttgggctcccaggctctattggctttccagggacacggggccctcaa
ggacccaaaggagtgcctggcgaccccggccaacatggtctaccaggcatcggtggtctc
catggatgtcgtggagcaaagggtcagaaaggagatgatggagcccccggtataactggc
tgctcaggacccacatcgaaccgatgtgatccaggaaaacctggtaccatgggccagtcg
ggctttccgggatctattggagcccaaggtatttttggggataaaggggagatcggcagc
gttggttctgaaggaattggccgcaaaggctctgtgggtgcatcaggatttccaggtgtc
cgtggaaagcctggttgtcagggcccccctggactcaatggaagctcgggacttcagggc
actggtggtccaaaaggtctgactggaccccggggctgggagggggtgcctgggaaccct
ggagagcctggtgtccccggagatccaggcatgactggagagagagggttcaacggacga
gatggtggtcaaggaatcgaagggccaaaaggacagaagggctttcaaggtccaacaggc
cctccaggaccaaccaactacatccgcattaaaggaaagacaggagacccaggacatccc
tccactgttggatttactggacctcgaggaagcaaaggtatgcagggagcagcaggcaag
ccagggcatccagggtgcgacggacccccgggcattgtaggaccccccgggccccctgga
ccctgtggcaaacaggggcctgcgggactcccgggactgaaggggtttgaaggatactgt
ggctttcccggaagcgttggagatccaggtgacaaaggatgctcagggaaacctggtgag
cctggtcccccaggatgtaaaggtcccaaaggtaataaaggggagtctgttggttgccct
ggtccaaatggagaaagggggcctcgtggagacaaggggcacctaggacctcctggatct
cctggagatccgggagggttgggttttactggggctccaggagagaaaggatccaaagga
gagaaaggacaccatggaaacatcggtcctggaggtgtgattgggcccccaggtcccagg
ggtcaaccaggtactccaggtattgaaggtaaaagtgggggtgatggtcctccaggacac
gaaggctaccgaggactcaaaggtcctcctggaccgctgggacttcatggactggacgga
ctgaaaggagagaagggggccactgggaccagaggtcggggctttccaggtgttgaaggt
tccttgggtccaccaggagataaaggtcctccagggcatcaaggtctttgcggcacatct
caacctggaccaccaggatacaaaggccccgtcggaaccaaagggcctccaggtaaatgt
ggacctccaggtaaacttggaccagactgcaaaactcctatcaaagggccctgtggagat
cctggctgtccaggccaagatggagagccagggagtcttggtgagatcggggatcctggt
caaaaccctccaattcgtggggatattggggacaatggtaacgtgggatgccaagggcca
aagggaccaagaggatgcccaggacatataggaacacaaggttgcactggatacccagga
cagaaaggtatgagaggcgatagtggtttgttgggaatacctggccctcgaggttgtaag
ggtgttcctggtcactgtggatctccaggacttcctggatctcctggagatcatggacca
aaaggggaaaagggtgacaccttagatcctgaactcatatcacctccaaagggtcctcct
ggagaaactggctcaactggtcaatttggacatcctggcctgaatggagaacaaggccca
tgtggtcctaaaggtgataagggagattatggacctcagggatgtaaaggctgcgatgga
gcccctggtctaaaaggagacaaaggagagccaggcctgccaggagagagtggagtagtg
ggacagaaaggtaaccgtggtccagaaggtgaaaagggttctcacggaccaaccaaagaa
ctgaacttgggcttgttggtgatgcacagtcaaagtgcaaacactcccaggtgtccaggc
aacatgaacaccctgtgggaaggattcagtctgctgtatctggaaggccaggagcgggca
cacactcaggacttgggtcagccggggtcatgcatgcgtgtcttttccaccttgcccttc
gctccatgtaacaagcgtacctgctcttacgccagtcgtaatgataaatcctattggcta
acgacgatggagcctgtcccacgtgaacacgtgagtggacccagcatccaaaactacatc
agccgctgtgtggtgtgtgaagccccatccctacccatcgcagtgcacagccagtccaga
cagtctgtggagtgtcccgaaaactggacagaactgtgggacggatactcctttgtcatg
catacaggcgcaggtgatgaaggtggcggccagcctctgacatcatcaggtagctgtctg
aaagcatacaaggcccagccgttcgtggagtgtcaggggcctcgtggaacctgccacttc
ttcgccaacatgtacagtttctggctgaccaccctgaccgacccggcgatgctgaccaat
gaccaagagcagaggaggagcattgcaaagtgcaaagtctgcatgaggctgtga
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integrated database retrieval system
