Maylandia zebra (zebra mbuna): 101481287
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Entry
101481287 CDS
T02814
Symbol
smarcc1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101481287 (smarcc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mze03021
]
101481287 (smarcc1)
03036 Chromosome and associated proteins [BR:
mze03036
]
101481287 (smarcc1)
Transcription machinery [BR:
mze03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
101481287 (smarcc1)
Chromosome and associated proteins [BR:
mze03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
101481287 (smarcc1)
PBAF complex
101481287 (smarcc1)
GBAF(ncBAF) complex
101481287 (smarcc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
101481287
NCBI-ProteinID:
XP_024659941
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All DBs
Position
LG11:complement(26883680..26914418)
Genome browser
AA seq
1137 aa
AA seq
DB search
MATAATTAGGTGSGGPTTGPVGGLTAVGRKKDGGPSAKFWESSDTISQLETVRLWIGKHY
KKYVQNDSPSSKSLAGLVVQLLHFQEDAFGRRINNPALTKLPAKCFLDFKAGGALCHILG
SVYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVYLSPDIEQKQASK
LKDIIKRHQGSITDDKSKATHIIHPSLSQQEEEEWLRPVMRKDKQVLVHWGLYPDSYDTW
VSASELDGDPEDPPSTDRPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKPVSFRQKIFPK
EEESSRTPDRKERKANSAGKKRRRSPSPPSTPAESRKKGGKKGNPGPHWKRRGHRGEEED
TEEDMTKDMDDSSAGASMEEGSISKNANSKKDSENTPVKGGHVADLDDMEDESVMSGGKD
DEEQGKSEINRLDANEDNVTEQTHHIVIPSYAAWFDYNSIHEIERRALPEFFNGKNKSKT
PEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDAES
RPLPMGPPPTPHFTVLADTPSGLMPLNHRPQPIPPPQPMPNFADKSKDKPIDLQNFSLRS
DLYNRKSIKGKAGSTTRDWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL
PIEDPYLESTEATLGPLSYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSR
VREEVPAELVEAHVKKVQEAARTTGKVDPAFGLESSGIAGTAPEEPEKTETTEPEKMETD
SDSQQVDKGELKDEAEKPSESAEKSDKTEATEKVKKEGAEASEREEENEEGGEAKTAQAD
KDKEESMETSSSDQEKEKEKEEKTPTEEGEDKGKKLEHDIGEGNIATAAAAALASAATKA
KHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQA
FHMEQLKYAEMKARQQMEQQAAAAAAAAAAAQAQGQGQGPGAGPHSGPPPPGMHPGGPTP
HHGGPPPHHGAPPPHHGGPPPGAAMHPGYPPMGHHPMAPHHPGQTGPMGPGQPMPGRMMS
GPPSAGPPPGGMPPMMPPRHPGAPNGMYPGPPPAQPEAIPPAPVGPPAPPSGRVADN
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgacaacggcagggggaacgggctcgggtggaccgaccactggcccc
gtcggtggtttaaccgcagtgggacgaaagaaagacggtggtccgtctgcgaaattttgg
gaaagttcagacacgatatcccagctggagacggtgcgactctggatcggaaagcactac
aagaagtacgtccagaatgactccccctccagtaaatccctggcaggtctcgtggtccaa
ctgctgcatttccaggaagacgcatttgggcgaagaatcaacaatcctgctcttacaaag
ctacctgccaagtgtttcctggatttcaaggcaggaggtgctctctgtcacattttggga
tctgtctacaagtttaagagcgagcaaggctggcgaagatttgacctacagaatccctcc
cggatggacaggaacgtggaaatgttcttaaatgttgaaaagaacctggtccagaataac
tgcttgactcgacccactgtttacctgtcgccagacatcgagcagaaacaggctagtaag
ctcaaagacatcatcaaaagacaccagggctccattactgatgacaagtcgaaggccacc
catatcattcacccatcactatcccagcaagaagaagaggagtggctgcgtcctgtcatg
agaaaagacaagcaggtgcttgtccattggggtctctacccagacagctacgacacctgg
gtgtcagccagtgagttagacggtgacccagaggacccacccagcactgacagaccttgg
aaggtccatgccaagtgggttttagacacagatgccttcaatgagtggatgaatgaggaa
gactacgaagtggatgagaacaagaagccagtcagcttccgccagaagattttccccaaa
gaggaagagtcttcccgtacacccgatcgcaaggagcgcaaggccaactctgcgggaaag
aagaggaggcgctcaccctctccacccagcactccagccgagtcccgtaagaagggaggc
aagaaggggaacccggggcctcactggaaacgacggggccacagaggagaagaggaggac
actgaagaggacatgacaaaagacatggacgattcctcagctggtgctagcatggaggag
ggcagcatctccaagaatgcaaattcaaagaaagacagcgagaatacaccggtcaaagga
gggcatgtggccgacttggatgacatggaagatgaatctgtgatgtctggtggaaaggat
gatgaggaacaaggcaaaagtgaaataaaccgactggatgccaatgaggacaatgtgact
gaacagacgcatcacatcgttatccccagctatgctgcttggtttgactacaacagcatc
catgagattgagagacgagccttgccagagttcttcaacggaaagaacaagtccaaaact
ccagaaatatacctggcctatcgaaacttcatgatcgacacgtatcggctgaatcctcag
gagtacctcacctccacctcctgccgcaggaacctgactggagatgtttgcgccatcatg
agggtacatgcattcttggagcagtggggtttggtgaactaccaggtcgatgcagagtct
cgtccattgccaatgggccccccacccactcctcattttactgtgctggctgacacaccc
tctggcctcatgcctcttaaccacagaccccaaccgattcctcctccacagccaatgccc
aattttgcagacaaaagcaaagacaagcccatcgacctgcagaactttagccttcgttct
gacctctacaacaggaaaagcatcaagggtaaagcaggcagcactaccagagattggact
gagcaggagactctgctgctgctcgaggccctggagatgtataaagatgactggaataaa
gtttcagagcatgttggttcacgcacccaagatgagtgcatcctgcacttcctgcgatta
cccattgaagatccatacctggagagtacggaggccacacttgggcctctttcctatcag
cccatacctttcagccagtctgggaacccagtcatgagcacagtagccttcctggcatct
gttgtggatcccagagtggcatctgctgcagccaaggcagcactagaggagttctctcgt
gtgcgtgaagaggtaccagctgagttggtggaggctcacgtgaagaaggtgcaggaggcg
gccagaactactgggaaggtggatcccgcctttggtttggagagcagcggcattgctgga
actgcccccgaggagccagaaaagactgaaaccacagagccggaaaagatggaaacagac
tccgactcccagcaggttgacaagggtgagttgaaggatgaagctgagaagccgagcgag
tctgccgagaagagcgacaagacagaagcaacagaaaaggtgaaaaaagagggagcggag
gcatcggagcgtgaagaagagaatgaagagggaggggaggctaagaccgctcaagcagac
aaagacaaagaggagtctatggagacatcatcttcagaccaggagaaggagaaagagaag
gaggagaaaacccctacagaggagggagaggacaagggcaagaagctggaacatgatatc
ggagaaggaaacattgccactgcggctgctgctgccttggcatctgctgccacaaaagcc
aagcatttggcagcagtggaggagcggaagatcaagtccttggtggctctgctggtcgag
acccagatgaagaaactggagatcaagttgagacactttgaggaacttgagaccatcatg
gaccgtgagaaagaggctttggagcttcagaggcagcagctgctaactgagcgtcaggcg
ttccacatggagcaactcaaatacgccgaaatgaaggcgaggcagcagatggagcagcaa
gcggcagccgcggctgctgctgctgcagctgcccaggcccaaggacagggacaggggcct
ggggctggaccacactctgggccccctccaccaggcatgcacccaggaggacctacaccc
caccacggaggacctcctccccaccacggagcacctccaccacaccatggagggccccca
cccggcgctgcaatgcaccctggctaccccccaatgggtcaccacccaatggcccctcac
cacccaggacagacaggaccaatgggaccaggtcagccaatgcctggacgtatgatgtct
ggccctccttctgctgggcctcctcccggtggcatgcctcccatgatgcccccacgccac
cccggagcccccaacggcatgtatcctggtccaccacctgcacagcctgaagcgatccct
cctgctcctgtaggtcctccagcacctccgagtgggcgagtggctgacaactaa
DBGET
integrated database retrieval system
