Maylandia zebra (zebra mbuna): 101481525
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Entry
101481525 CDS
T02814
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze04510
Focal adhesion
mze04512
ECM-receptor interaction
mze04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101481525 (col2a1b)
04518 Integrin signaling
101481525 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101481525 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mze00536
]
101481525 (col2a1b)
Glycosaminoglycan binding proteins [BR:
mze00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101481525 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
101481525
NCBI-ProteinID:
XP_004547782
LinkDB
All DBs
Position
LG5:complement(38674763..38723278)
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AA seq
1491 aa
AA seq
DB search
MFSFMDSRTILLLVASQVCLLAFVRCQVEDDQEDAFSCVQDGQRYSDKDVWKPEPCRICV
CDTGTVLCDEIVCEELKDCPKPEIPFGECCPICAADQPPTSGIPGAKGQKGEPGDITDVI
GPRGPPGPTGPPGEQGPRGPRGDKGEKGGPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGNPGEAGEPGHS
GPMGPRGPPGPSGKPGDDGEAGKPGKSGERGPSGPQGARGFPGTPGLPGIKGHRGYPGRD
GAKGETGAVGAKGESGSPGESGAPGPMGPRGLPGERGRPGASGAAGARGNDGLTGPAGPP
GPVGPSGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIAGFKGEAGPKGEIGPP
GLQGPNGPLGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPS
GASGPKGASGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEPGKSGEKGLAGAPGLRGLPGKDGETGSAGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGLAGATGPRGERGFPGERGAAGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGTAGAQGPPGLQGMPGERGGAGIPGPKGDRGDLGEKGPE
GAPGKDGARGLTGPIGPPGPAGPNGEKGESGPAGPSGAPGVRGAPGDRGETGPPGPAGFA
GPPGADGQPGTKGEQGEPGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPPGPAGPSGKDGPKGVRGDGGPPGRQGDAGLRGPAGTPGEK
GDAGEDGPPGPPGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGGPGDR
GPPGPVGPPGLTGPAGEPGREGTPGSDGPPGRDGSPGNKGERGNTGPAGAPGAPGAPGAS
GPVGPTGKQGDRGEPGPQGPAGSSGPAGARGMPGPQGPRGDKGEAGEAGERGQKGHRGFT
GLQGLPGPPGQPGDQGATGPAGPAGQRGPPGPVGPAGKDGSNGLPGPIGPPGPRGRSGET
GPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKGPDPLRYMRADQASGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCN
METGESCVHPKPSSIPRKNWWTSKSKDRKHVWFGESMNGGFHFNYGDDSLAPNTAAIQMT
FLRLLSTEASQNITYHCKNSVAYMDGSTGNLKKAVLLQGSNDVEIRAEGNSRFTYAVLED
GCTRHTGKWGKTVIEYRSQKTSRLPILDIAPMDIGGADQEFGVDVGPVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattccaggactatactgctacttgtagcgagccaagtttgtcta
ttagcctttgtgagatgtcaggtggaagacgaccaagaggacgcgtttagctgtgtacaa
gatggacagcgttatagtgacaaggatgtgtggaaaccagagccttgtcgcatctgtgtg
tgtgacactggaaccgtcctgtgtgatgaaattgtctgcgaggagctaaaagactgcccc
aaacctgaaatcccatttggagagtgttgccccatctgcgctgctgaccagcctccaacc
tctggaatacctggtgctaagggccagaaaggcgaacccggagacattacggatgttata
ggaccaagaggaccacctggcccaacgggaccaccaggagagcaaggaccccgaggacca
agaggagataaaggagagaagggaggtcctggcccccgtggcagagatggcgagcctggc
acccccggaaaccctggcccccctggacctccaggacctaatggaccccctggccttggt
ggaaactttgctgctcagatggctggtggttttgacgagaaggccggcggcgcacaaatg
ggtgtgatgcaaggaccaatgggccccatgggacctagaggaccacctgggccaactgga
tcacctggtccacaaggtttccaaggtaatcctggagaagctggagagcctggacattca
ggacccatgggaccccgtggcccccctggaccttctggaaaacctggagatgatggtgaa
gctggcaaacctggaaaatcaggtgagcgtggaccttcgggacctcagggagctcgtgga
ttcccgggaactcctggtctgcctggcatcaaggggcacagaggttatccagggcgtgac
ggtgcaaagggagagactggagctgttggtgctaagggtgaatctggttctcctggagag
agcggcgctccgggaccaatgggacctcgtggtttgcctggtgagagaggacgtcctgga
gccagtggagctgctggagctcgtggaaatgatggcctgaccggtcctgctggtccacct
ggccccgttggaccttccggagctccaggcttccctggctcgcccggtgcaaaaggagaa
gccggacctactggtgctcgtggacctgagggtgctcagggacctcgtggagagtctggt
actcctggatcttctggaccctctggcgcttctggtaatcccggtactgatggcatccct
ggagcgaaaggatctgctggtgctcctggcatcgctggtgctcctggtttccctggacct
cgtgggcctcccgggcctcagggagccactggacctcttggtccaaagggaacatctgga
gacccaggtatcgcagggttcaagggagaggctggacccaaaggagaaattggaccacct
ggtcttcagggaccaaatggcccactaggagaagaaggcaagagagggcccagaggtgag
cctggttctgctggaccactgggaccccctggagagagaggagctcccggtaaccgtggt
ttccctggtcaagatggtctggctggtccaaagggagcccccggtgagcgtggaccctca
ggagccagcggtcccaaaggtgccagcggtgaccccggccgccctggagagcccggtctg
cccggtgccagaggtctgactggacgccccggtgatgctgggcctcaaggcaaagttgga
ccttctggagcgcctggtgaggatggtcgtccaggacctcctggtccacagggagcccga
ggacagcctggagtcatgggattccctggaccaaagggagcaactggtgaacctggcaag
tctggtgagaaaggactggctggagctcctggtctgagaggtctgcccggcaaagatgga
gaaactggctcagctggaccccctggccctgctggtcctgctggagaaagaggagagcaa
ggacagcctggtccctctggcttccagggtcttcctggccctcctggtccacctggtgag
ggaggaaagcctggagatcagggtgttcctggagaggctggacttgctggtgccactgga
cctagaggagaacgtggttttcccggcgagagaggagccgctggccctcagggtctgcag
ggacccagaggtctgcctggaactcctggaactgacggacccaagggagcgattggacct
gcaggtactgcaggggctcagggaccccctggcctgcagggtatgcctggagagagagga
ggtgctggtattcccggacccaaaggagacagaggagaccttggagagaaaggacccgaa
ggtgctccaggcaaagatggtgccagaggtctcactggtcccattggtccccctggtcct
gctggtcccaatggtgagaagggtgaatctggtcctgctggtccttctggagctcctggt
gtccgcggtgctcctggtgacaggggtgagactggacctcctggacctgctggctttgct
ggacccccaggtgctgacggtcagcctggaaccaagggagagcagggagaacctggacag
aagggagacgctggtgctcctggaccccaaggaccatctggagcccctggacccgctggt
cccacgggtgtttctggacctaaaggtgctcgtggtgctcagggacctcctggtgccact
ggtttcccgggggctgccggccgagttggaccccctggccccaatggtaatcctggacct
cctggtcctgctggtccttccggtaaagatggacccaaaggcgtgaggggagatggtgga
cctccaggcagacagggtgatgctgggcttcgtggtcccgctggaactcccggagagaag
ggagacgctggagaggatggtccacctggcccgcctggtccttcaggtcctcagggattg
gctggtcagcgcggtattgttggtctccctggacagcgtggcgagagaggtttccccggt
ctgcctggaccttctggtgagcctggaaagcaaggagcttctggtggtcctggagaccgt
ggaccccctggacctgttggaccacctggactgactggacctgctggagagcctggcaga
gagggcacccctggatctgatggacctcccggtagagatggttctcctggaaataagggt
gagcgtggtaacactggtcctgctggtgctcctggtgctccgggcgctcctggtgcttct
ggcccagttggtcccactggcaaacagggagacagaggagagcctggtccacaaggacct
gctggatcttcaggacctgctggtgcccgaggaatgcctgggccccaaggaccccgtggt
gacaaaggcgaggcaggagaagctggtgaaagaggacagaagggacaccgaggcttcact
ggtctgcagggtctccccggacctccaggtcaacctggagaccagggtgctactggacct
gctggacctgcaggacaacgtggaccacctggacccgttggccctgctggaaaagacggt
tcaaatggtctgcctggacccattggaccccctggaccccgtggtcgcagtggagagacc
ggtcctgctggtcctcctggaaaccccggaccccctggtcctcctggtcccccgggccct
ggcatcgatatgtctgccttcgctggtttgggtcagactgagaaaggccccgatcctctc
aggtacatgagagccgaccaggcttctggaaatctccgacagcatgatgctgaggtcgac
gccactctcaaatctctcaacaaccagattgagaacatccgcagccctgagggatccaag
aaaaaccctgctcgcacctgcagagacctgaaactgtgccaccctgactggaagagtgga
gagtactggattgatcccaatcaaggctgcaccgtagatgctattaaggtcttctgcaac
atggagacaggggagtcctgcgtccaccccaagccttccagcatccctcgcaagaactgg
tggaccagcaagagcaaggaccgcaaacatgtctggttcggagaaagcatgaatggagga
ttccattttaactatggcgatgacagcctggcgcccaacactgccgccattcagatgacg
ttcctgagactgctgtccactgaggcttctcaaaacatcacctaccactgtaagaacagc
gtggcctacatggacggctcgacaggcaacctgaagaaggccgtgctgctgcagggctcc
aatgacgtggagatcagagccgagggcaacagccgcttcacttacgctgtgttggaagat
ggctgcacgagacacacgggaaaatggggcaagacggtgattgaatacagatcacagaag
acctctcgtctgcccatcctggacattgcacccatggatatcggtggagcagaccaggag
tttggagtcgatgtcgggccggtctgcttcttgtaa
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integrated database retrieval system
