Maylandia zebra (zebra mbuna): 101481587
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Entry
101481587 CDS
T02814
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X2
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03013
Nucleocytoplasmic transport
mze03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101481587
03015 mRNA surveillance pathway
101481587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mze03019
]
101481587
Enzymes [BR:
mze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101481587
5.6.2.5 RNA 5'-3' helicase
101481587
Messenger RNA biogenesis [BR:
mze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101481587
mRNA cycle factors
Common to processing body (P body) and stress granule
101481587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
NAT10_TcmA_helicase
ATPase
UvrD-helicase
AAA_16
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
101481587
NCBI-ProteinID:
XP_004564844
UniProt:
A0A3P9CJ60
LinkDB
All DBs
Position
LG15:complement(27851008..27865162)
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AA seq
1101 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDEGLHNGGVDDSVAKASQLLAELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAPGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNGGRPSNMYFQTHDQIGMIGAGPGPMAA
MNIPIPFNLVMPPMAPPSYLGQPNGPAAGRGAMKGKPGRGGRQRVRGSAHQGACQGNGPN
SQASQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQ
DSTYQGERAYQHGGVTGLSQY
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcccagaccctcaccttcctggacaccgaggaa
gcggagttgctcggagcggacacccagggctcggagtatgacttcaccgacttcaccctt
cccagtcagacgcaaactcaagggcagacacagagccagctggacagccaggtaaatggt
cccgatgagggtcttcacaacggtggagtggatgattccgtggccaaagccagccaactg
ttggccgagctgaactttgaggaggatgaagaggacacgtactacaccaaagacctgccc
ttgcacgcgtgcagctactgtggtatccacgatccagcgtgtgtggtgtactgcaatacc
agcaagaagtggttctgtaatgggcgtggcaatacatccggcagccatattgtgaaccat
ttggtgagagcgaaatgcaaagaagtgactctgcataaagatgggccgctgggcgaaacc
gtgctggaatgttacaactgcggctgtcgcaacgtctttctcctgggcttcatcccagca
aaggctgattctgtggtggtgctactctgcaggcagccctgtgccagccaaagcagcctg
aaggacatcaactgggacagctcgcagtggcagccgctgatccaggaccgatgctttctg
tcctggctggtgaagatcccatcagaacaggagcagcttagagcccgtcagatcacggcc
cagcaaatcaacaagttggaggaactctggaaggacaatcccactgccaccttggaagac
ctggagaaacctggagtagatgaggagccccagcatgtactgctgcgttacgaggatgct
tatcaataccaaaatatatttggccctttggtcaaattggaagctgactacgacaagaag
cttaaggagtcacagactcaagataatataacagttaggtgggatctggggctgaacaaa
aagcggattgcctatttcactcttcctaagacggattcaggtgatatgcggctgatgcaa
ggtgatgagatttgtctgcggtacaagggagacctggccccgctgtggaagggcatcggt
catgtcatcaaggtcccagacaactatggagatgaaattgccattgagttgcggagcagt
gttggagcacctgtggaaatcccccacaacttccaggtggactttgtgtggaagtcgact
tcctttgataggatgcaaagcgccctgaagacgtttgcggtggatgagacctcagtgtct
ggctacatttaccacaaactcctggggcatgaagttgaggatgtcaccattaagtgccag
ctgccaaagcgcttcactgccccaggccttcctgacctcaatcactcacaggtgtatgct
gtgaagacggtgcttcagagacctcttagtctgatccaggggcctcctggcactgggaag
accgtcacctctgccacgattgtgtaccacttgtcccgacagggcaacggaccagttttg
gtgtgtgctcccagtaacattgctgtggaccagctgactgagaagatcgataagactgga
ctgaaggttgtcaggctgtgtgccaagagcagggaggccatcgagtcccctgtgtctttc
cttgctttacacaaccagatcagcaacatggacagtatgccggagcttcagaaactacag
cagctaaaagatgagactggcgagctgtcgtctgctgatgagaaacgctacagggctctg
aagcgcactgctgagagggagctgctcatgaatgctgacgtaatctgctgcacttgtgtc
ggagctggagaccctcgtctggccaagatgcagttccgttcgatcctgatcgatgagagc
acccaagccactgagcccgagtgtatggtgcccgtggtgttgggagcaaagcagcttatt
ctggtgggtgaccactgccagttgggtcctgtggtgatgtgtaagaaggcggctaaagca
ggtctgtcgcagtccctgtttgagcgcctagtggtcctggggatccggccgatccgcctg
caggtccagtaccgtatgcacccggctctcagtgccttcccctctaacattttctacgag
ggatcactgcagaatggcgtcactgcagctgaccgcatcaagaagggctttgatttccag
tggccacaaccagacaagcccatgttcttttacgttactcaaggtcaggaggagattgcc
agctctggaacctcgtaccttaacaggactgaagctgccaacgtggagaaaatcaccacc
aggctgctgaaggcgggagccaaacccgatcagatcggcatcatcaccccgtacgagggt
cagcgctcctacctggtccaatacatgcagttcagcggctccctgcacaccaaactctat
cagcaagtggaaattgccagcgtggacgcctttcagggcagagagaaggacttcatcatc
ctgtcttgtgttcgagccaacgagcaccagggaattggcttcctgaacgaccctcgccgt
ctcaacgtggcgctgaccagggccaagtatggtgtcatcattgtgggcaaccccaaggcg
ctctccaagcagccactgtggaacaacctgctgaacaactacaaggagcaaaaggtcctc
gtggaggggcccctaaacaacctgagggagagcctcatgcagttcagcaagccccgcaaa
ctggtcaacaccatcaaccctggaggacgttttatgagcactgcaatgtacgatgcccgt
gaggctctcatccctggttctgcatacgaccggagcaatggtggacgtccatctaatatg
tacttccaaacacatgaccagattgggatgattggtgcaggcccaggtcccatggctgct
atgaatattcctatacccttcaacttggtgatgccaccaatggctccacctagctatcta
ggtcagcccaatggccctgctgcagggcgtggagcaatgaaaggtaagcctgggcgtggt
gggcggcagagggtccgtggttcagcacaccagggtgcctgtcagggtaatggacccaac
agtcaggccagccaggatggagcctcccaatccttctcccaggggccactgacacaaggc
tacatctccatgagccagccctcacagatgagccagcctggcctctcccagccggagctc
tcccaggacagctacctgggtgacgagttcaagtcccaaatcgacgtggctttgtcccag
gactcgacctaccagggtgaacgtgcgtaccagcatggcggcgtgactggactgtcgcag
tactga
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integrated database retrieval system
