Maylandia zebra (zebra mbuna): 101481678
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Entry
101481678 CDS
T02814
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03015
mRNA surveillance pathway
mze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101481678
09123 Folding, sorting and degradation
03018 RNA degradation
101481678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mze03019
]
101481678
03041 Spliceosome [BR:
mze03041
]
101481678
Messenger RNA biogenesis [BR:
mze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101481678
mRNA cycle factors
Stress granule specific factors
101481678
Spliceosome [BR:
mze03041
]
Complex C
Other components
Complex C specific factors
101481678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_3
RRM_occluded
HTH_58
PABC_AtC3H46
POP1_C
Motif
Other DBs
NCBI-GeneID:
101481678
NCBI-ProteinID:
XP_004560096
UniProt:
A0A3P9DGZ3
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All DBs
Position
LG11:4958219..4963656
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AA seq
635 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRA
AYYSANQLAQLRPSPRWATQGVRPQHFQNMPNAMRPTAPRPQALNTIRATATTNTQVPRM
MASQRMPTQALNQRPANASAAAAPVRAMPQYKYAAGVRNPQQHMASQPQVTMQQPAVHVQ
GQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKSSTPAGVPSV
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccagcgcgcctagctacccgatggcctccctgtatgtgggagacctgcaccca
gacgttaccgaagccatgctatacgagaaattcagcccggctggacccatcctctccatt
agagtatgcagagacatgatcacccgtcgctccctaggctatgcctatgtgaacttccaa
cagccagctgacgccgaaagagctttggacaccatgaactttgatgtaataaaaggcagg
cctctccgtatcatgtggtctcagcgtgacccctcactgaggaagagtggggtgggaaac
atcttcatcaagaatctggacaaatccatcgataacaaggccttgtatgatacattctct
gcatttggaaacatcctgtcctgcaaggtggtttgtgatgaaaatggctcaaagggttac
ggctttgtgcactttgagacccatgaagctgctgaacgggccattgagaaaatgaacggc
atgttgctcaatgacagaaaagtatttgttggacgattcaaatcgcgtaaagagagggaa
gctgagcttggagcacgagccagagagttcactaacgtttatatcaagaactttggcgag
gacatggatgatgagaagctgaaggagttgtttagcaaatatgggcctgccctcagcatc
cgggttatgactgatgaaagtggcaaatccaagggatttggctttgtcagcttcgagagg
catgaagatgcccagaaggctgtagatgaaatgaacggtaaagaactgaatggcaggcaa
gtctatgtgggccgtgcacagaagaaaggggagcggcagaatgagctcaaacgcaaattt
gagcagatgaaacaggatcgcatgaccagatatcagggtgtcaatctgtatgtgaagaac
ctggatgatggccttgatgacgagcgtctgcgcaaagaattctccccatttggcaccata
acaagtgctaaggtgatgatggagggtggacggagcaaaggctttggctttgtgtgcttc
tcttctccagaagaggccactaaagctgtaacagagatgaatgggcgtattgtggctaca
aagccactgtatgtggcccttgcccagcggaaagaggagcgtcaggctcatctaaccaac
cagtacatgcaaaggatggccactgttcgagctgtgcccaaccctgtccttaacccatac
cagcctgctccaccttcaggatatttcatggcggctatccctcaggctcagaaccgtgct
gcatactactctgccaaccagctggcccagctgcgccccagcccccgttgggctactcaa
ggagtgcgtcctcagcacttccagaacatgcccaatgctatgcgcccaacagcacccagg
cctcaggccttaaacaccatccgtgcaaccgccaccaccaacacccaggtcccacgcatg
atggcttctcagcgtatgcccacacaggcgctcaaccagcgccctgccaatgcttcagcc
gccgcagccccagtgcgtgccatgccccagtacaaatatgctgctggtgtgcgcaaccct
cagcagcacatggcctcccagccacaggtcaccatgcagcagccggcagtccatgtccaa
ggacaggagcctctaactgcctccatgctggctgcagccccacctcaggaacagaagcag
atgctgggtgagcgtctgttccctctgatccagaacatgcaccccagcctggctggcaag
atcactggtatgctgctggagattgacaactcagagctgcttcacatgcttgagtcacct
gagtcgttgcgctcaaaggtggatgaggctgttgctgtgctccaggcccaccaggccaag
gaggctgctcagaagtcctccacccctgctggtgttcccagcgtctaa
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